NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315271_10052540

Scaffold Ga0315271_10052540


Overview

Basic Information
Taxon OID3300032256 Open in IMG/M
Scaffold IDGa0315271_10052540 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2954
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048380Metagenome / Metatranscriptome148Y
F063735Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0315271_100525402F048380N/AVSPDSGTPGLPPHAARGHITRATWHTIGLIVAALLAYAVWRGYQNPDLLLDLSVLRLC
Ga0315271_100525404F063735N/AMLRFRRPPSGPLGDVRSAERWLASLPVKDPLVAQRNIVAELAKLAARTARRTPPVLEAVFIVDTHANGLVRTLTAQYIAHANRSAKIEDQLWHALFELTQGFQECYAAFAREIGDQVPRSKWHPLLPVLFGRQIIHLRHDAKLRLYRCERWVPAKWSELLGSFARACAHRIEREPLRLDPMSGPTTIERAFLMTLLLQLADPGNLTSKQIEWIDAQLDAWCQPLRLTVRATSATTFYVDLAGNVGLRRRSIAPLEGRVLFVDLQPLHALLLQNRVALEQAVKNEPRSGTTSQQREQLELFVKLASRIDPEFRPLARRGERKPASGAVDAIVGFANISGFLRGDRTAAIDAIDASRNFGNTMELAVFGRTRA
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