Metagenome / Metatranscriptome Family F048380

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F048380
Family Type	Metagenome / Metatranscriptome
Number of Sequences	148
Average Sequence Length	56 residues
Representative Sequence	VSPGTGTPALPPHAARGRITRAMWHTIGLIVAALLAYALWRGYQNPDLLLDLSALRLC
Number of Associated Samples	119
Number of Associated Scaffolds	148

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	40.14 %
% of genes near scaffold ends (potentially truncated)	28.38 %
% of genes from short scaffolds (< 2000 bps)	84.46 %
Associated GOLD sequencing projects	112
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.324 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (10.135 % of family members)
Environment Ontology (ENVO)	Unclassified (41.892 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.892 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.16% β-sheet: 0.00% Coil/Unstructured: 48.84%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 148 Family Scaffolds
PF04299	FMN_bind_2	35.81
PF13411	MerR_1	14.86
PF01430	HSP33	4.73
PF03129	HGTP_anticodon	1.35
PF02588	YitT_membrane	0.68
PF00501	AMP-binding	0.68
PF11741	AMIN	0.68
PF04392	ABC_sub_bind	0.68
PF01546	Peptidase_M20	0.68
PF00749	tRNA-synt_1c	0.68

COG ID	Name	Functional Category	% Frequency in 148 Family Scaffolds
COG1281	Redox-regulated molecular chaperone, HSP33 family	Posttranslational modification, protein turnover, chaperones [O]	4.73
COG0124	Histidyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.35
COG0423	Glycyl-tRNA synthetase, class II	Translation, ribosomal structure and biogenesis [J]	1.35
COG0441	Threonyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.35
COG0442	Prolyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.35
COG0008	Glutamyl- or glutaminyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.68
COG1284	Uncharacterized membrane-anchored protein YitT, contains DUF161 and DUF2179 domains	Function unknown [S]	0.68
COG2364	Uncharacterized membrane protein YczE	Function unknown [S]	0.68
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.68

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.32 %
Unclassified	root	N/A	0.68 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.32 %
Unclassified	root	N/A	0.68 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.32 %
Unclassified	root	N/A	0.68 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	96.62 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.68 %
Unclassified	root	N/A	0.68 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	61.49 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.68 %
Unclassified	root	N/A	0.68 %

Name	Rank	Taxonomy	Distribution
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	10.14 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	10.14 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.68 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.68 %
Unclassified	root	N/A	0.68 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	10.14 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	10.14 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.68 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.68 %
Unclassified	root	N/A	0.68 %

Name	Rank	Taxonomy	Distribution
Aromatoleum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum	10.14 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	10.14 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.68 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.68 %
Unclassified	root	N/A	0.68 %

Name	Rank	Taxonomy	Distribution
unclassified Aromatoleum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum	10.14 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	10.14 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.68 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.68 %
Unclassified	root	N/A	0.68 %

Name	Rank	Taxonomy	Distribution
Aromatoleum sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	10.14 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	10.14 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.68 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.68 %
Unclassified	root	N/A	0.68 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_109119115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	541	Open in IMG/M
3300001431\|F14TB_105213579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	769	Open in IMG/M
3300002128\|JGI24036J26619_10055375	All Organisms → cellular organisms → Bacteria → Proteobacteria	776	Open in IMG/M
3300003858\|Ga0031656_10121144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	934	Open in IMG/M
3300003861\|Ga0031654_10004870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4012	Open in IMG/M
3300004048\|Ga0055494_10007454	All Organisms → cellular organisms → Bacteria → Proteobacteria	1494	Open in IMG/M
3300004057\|Ga0055496_10041719	All Organisms → cellular organisms → Bacteria → Proteobacteria	951	Open in IMG/M
3300004114\|Ga0062593_100039367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2813	Open in IMG/M
3300004156\|Ga0062589_102754341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	512	Open in IMG/M
3300004479\|Ga0062595_101199243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	674	Open in IMG/M
3300004479\|Ga0062595_101691083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	595	Open in IMG/M
3300004779\|Ga0062380_10149131	All Organisms → cellular organisms → Bacteria → Proteobacteria	913	Open in IMG/M
3300004779\|Ga0062380_10337645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	644	Open in IMG/M
3300005093\|Ga0062594_100899822	All Organisms → cellular organisms → Bacteria → Proteobacteria	835	Open in IMG/M
3300005328\|Ga0070676_10023064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3496	Open in IMG/M
3300005328\|Ga0070676_10185658	All Organisms → cellular organisms → Bacteria → Proteobacteria	1354	Open in IMG/M
3300005328\|Ga0070676_10306024	All Organisms → cellular organisms → Bacteria → Proteobacteria	1079	Open in IMG/M
3300005331\|Ga0070670_100083456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2745	Open in IMG/M
3300005332\|Ga0066388_102192003	All Organisms → cellular organisms → Bacteria → Proteobacteria	997	Open in IMG/M
3300005333\|Ga0070677_10054480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1630	Open in IMG/M
3300005336\|Ga0070680_101969924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	506	Open in IMG/M
3300005338\|Ga0068868_100344127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1276	Open in IMG/M
3300005344\|Ga0070661_101394632	All Organisms → cellular organisms → Bacteria → Proteobacteria	589	Open in IMG/M
3300005353\|Ga0070669_100303944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1284	Open in IMG/M
3300005354\|Ga0070675_100240211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1583	Open in IMG/M
3300005354\|Ga0070675_101238963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	687	Open in IMG/M
3300005355\|Ga0070671_101295080	All Organisms → cellular organisms → Bacteria → Proteobacteria	643	Open in IMG/M
3300005356\|Ga0070674_100181890	All Organisms → cellular organisms → Bacteria → Proteobacteria	1611	Open in IMG/M
3300005356\|Ga0070674_101017157	All Organisms → cellular organisms → Bacteria → Proteobacteria	728	Open in IMG/M
3300005364\|Ga0070673_100192404	All Organisms → cellular organisms → Bacteria → Proteobacteria	1753	Open in IMG/M
3300005438\|Ga0070701_10012243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3862	Open in IMG/M
3300005441\|Ga0070700_100820806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	750	Open in IMG/M
3300005444\|Ga0070694_100094038	All Organisms → cellular organisms → Bacteria → Proteobacteria	2108	Open in IMG/M
3300005456\|Ga0070678_101635629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	605	Open in IMG/M
3300005456\|Ga0070678_102072940	All Organisms → cellular organisms → Bacteria → Proteobacteria	539	Open in IMG/M
3300005456\|Ga0070678_102238709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	518	Open in IMG/M
3300005488\|Ga0074213_147153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	977	Open in IMG/M
3300005548\|Ga0070665_101806389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	618	Open in IMG/M
3300005564\|Ga0070664_100640026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	988	Open in IMG/M
3300005615\|Ga0070702_101292747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	592	Open in IMG/M
3300005719\|Ga0068861_101260267	All Organisms → cellular organisms → Bacteria → Proteobacteria	717	Open in IMG/M
3300005719\|Ga0068861_102697932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	501	Open in IMG/M
3300005829\|Ga0074479_10718925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	837	Open in IMG/M
3300005830\|Ga0074473_11067417	All Organisms → cellular organisms → Bacteria → Proteobacteria	965	Open in IMG/M
3300005836\|Ga0074470_10123327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	631	Open in IMG/M
3300005841\|Ga0068863_100120679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2499	Open in IMG/M
3300005842\|Ga0068858_100938649	All Organisms → cellular organisms → Bacteria → Proteobacteria	847	Open in IMG/M
3300006237\|Ga0097621_100383623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1255	Open in IMG/M
3300006573\|Ga0074055_11557734	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300006641\|Ga0075471_10322223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	784	Open in IMG/M
3300006844\|Ga0075428_100118418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2884	Open in IMG/M
3300006854\|Ga0075425_100701620	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300009162\|Ga0075423_10462023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1334	Open in IMG/M
3300009167\|Ga0113563_11317382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	845	Open in IMG/M
3300009176\|Ga0105242_10862515	All Organisms → cellular organisms → Bacteria → Proteobacteria	902	Open in IMG/M
3300009179\|Ga0115028_12105997	All Organisms → cellular organisms → Bacteria → Proteobacteria	501	Open in IMG/M
3300009792\|Ga0126374_10281541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1104	Open in IMG/M
3300009792\|Ga0126374_11724160	All Organisms → cellular organisms → Bacteria → Proteobacteria	521	Open in IMG/M
3300010360\|Ga0126372_12492655	All Organisms → cellular organisms → Bacteria → Proteobacteria	568	Open in IMG/M
3300010371\|Ga0134125_12646390	All Organisms → cellular organisms → Bacteria → Proteobacteria	545	Open in IMG/M
3300010398\|Ga0126383_10485856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1291	Open in IMG/M
3300010399\|Ga0134127_12621285	All Organisms → cellular organisms → Bacteria → Proteobacteria	584	Open in IMG/M
3300010400\|Ga0134122_13102628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	519	Open in IMG/M
3300012971\|Ga0126369_13127321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	542	Open in IMG/M
3300013306\|Ga0163162_10543360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1290	Open in IMG/M
3300014324\|Ga0075352_1082930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	815	Open in IMG/M
3300014969\|Ga0157376_12187935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	592	Open in IMG/M
3300015082\|Ga0167662_1007294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1344	Open in IMG/M
3300015195\|Ga0167658_1004675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4796	Open in IMG/M
3300015258\|Ga0180093_1187971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	525	Open in IMG/M
3300015371\|Ga0132258_10115919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	6354	Open in IMG/M
3300015371\|Ga0132258_12794088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1216	Open in IMG/M
3300015373\|Ga0132257_100499275	All Organisms → cellular organisms → Bacteria → Proteobacteria	1492	Open in IMG/M
3300015373\|Ga0132257_100523342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1457	Open in IMG/M
3300017792\|Ga0163161_10873407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	760	Open in IMG/M
3300017959\|Ga0187779_10254627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1112	Open in IMG/M
3300017959\|Ga0187779_10758975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	659	Open in IMG/M
3300018060\|Ga0187765_10787024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	633	Open in IMG/M
3300018083\|Ga0184628_10241990	All Organisms → cellular organisms → Bacteria → Proteobacteria	947	Open in IMG/M
3300018476\|Ga0190274_10112370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2200	Open in IMG/M
3300018476\|Ga0190274_13154946	All Organisms → cellular organisms → Bacteria → Proteobacteria	554	Open in IMG/M
3300021081\|Ga0210379_10149448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	993	Open in IMG/M
3300025315\|Ga0207697_10052109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1692	Open in IMG/M
3300025315\|Ga0207697_10418580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	595	Open in IMG/M
3300025899\|Ga0207642_10010366	All Organisms → cellular organisms → Bacteria → Proteobacteria	3282	Open in IMG/M
3300025903\|Ga0207680_10521096	All Organisms → cellular organisms → Bacteria → Proteobacteria	847	Open in IMG/M
3300025903\|Ga0207680_10946684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	617	Open in IMG/M
3300025907\|Ga0207645_10007338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7793	Open in IMG/M
3300025907\|Ga0207645_10020666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4305	Open in IMG/M
3300025908\|Ga0207643_11145809	All Organisms → cellular organisms → Bacteria → Proteobacteria	501	Open in IMG/M
3300025923\|Ga0207681_10346703	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300025925\|Ga0207650_10001018	All Organisms → cellular organisms → Bacteria → Proteobacteria	21036	Open in IMG/M
3300025937\|Ga0207669_11817631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	521	Open in IMG/M
3300025938\|Ga0207704_11948389	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	505	Open in IMG/M
3300025972\|Ga0207668_11588686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	590	Open in IMG/M
3300026023\|Ga0207677_10152660	All Organisms → cellular organisms → Bacteria → Proteobacteria	1784	Open in IMG/M
3300026067\|Ga0207678_11990350	All Organisms → cellular organisms → Bacteria → Proteobacteria	506	Open in IMG/M
3300026075\|Ga0207708_10976171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	735	Open in IMG/M
3300026089\|Ga0207648_10098794	All Organisms → cellular organisms → Bacteria → Proteobacteria	2556	Open in IMG/M
3300026089\|Ga0207648_10716942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	928	Open in IMG/M
3300026121\|Ga0207683_11740839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	572	Open in IMG/M
3300027840\|Ga0209683_10158750	All Organisms → cellular organisms → Bacteria → Proteobacteria	1035	Open in IMG/M
3300027915\|Ga0209069_10050224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1961	Open in IMG/M
3300028802\|Ga0307503_10725259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	561	Open in IMG/M
3300030002\|Ga0311350_11606721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	576	Open in IMG/M
3300031543\|Ga0318516_10158435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1302	Open in IMG/M
3300031544\|Ga0318534_10787762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	534	Open in IMG/M
3300031572\|Ga0318515_10388140	All Organisms → cellular organisms → Bacteria → Proteobacteria	748	Open in IMG/M
3300031640\|Ga0318555_10265560	All Organisms → cellular organisms → Bacteria → Proteobacteria	928	Open in IMG/M
3300031720\|Ga0307469_10033368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3023	Open in IMG/M
3300031720\|Ga0307469_10207924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1535	Open in IMG/M
3300031720\|Ga0307469_11098860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	747	Open in IMG/M
3300031820\|Ga0307473_10046951	All Organisms → cellular organisms → Bacteria → Proteobacteria	2016	Open in IMG/M
3300031873\|Ga0315297_10076166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2611	Open in IMG/M
3300031873\|Ga0315297_10407888	All Organisms → cellular organisms → Bacteria → Proteobacteria	1140	Open in IMG/M
3300031873\|Ga0315297_10470109	All Organisms → cellular organisms → Bacteria → Proteobacteria	1057	Open in IMG/M
3300031879\|Ga0306919_10639040	All Organisms → cellular organisms → Bacteria → Proteobacteria	821	Open in IMG/M
3300031946\|Ga0310910_10567708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	900	Open in IMG/M
3300031949\|Ga0214473_11279435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	754	Open in IMG/M
3300031997\|Ga0315278_10273607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1744	Open in IMG/M
3300031997\|Ga0315278_12095263	All Organisms → cellular organisms → Bacteria → Proteobacteria	526	Open in IMG/M
3300032008\|Ga0318562_10192131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1181	Open in IMG/M
3300032009\|Ga0318563_10030253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2707	Open in IMG/M
3300032013\|Ga0310906_11300583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	531	Open in IMG/M
3300032163\|Ga0315281_10735773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1024	Open in IMG/M
3300032163\|Ga0315281_11375937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	697	Open in IMG/M
3300032164\|Ga0315283_12265012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	533	Open in IMG/M
3300032174\|Ga0307470_11305793	All Organisms → cellular organisms → Bacteria → Proteobacteria	594	Open in IMG/M
3300032177\|Ga0315276_12037216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	585	Open in IMG/M
3300032177\|Ga0315276_12300422	All Organisms → cellular organisms → Bacteria → Proteobacteria	543	Open in IMG/M
3300032256\|Ga0315271_10052540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2954	Open in IMG/M
3300032256\|Ga0315271_10188136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1645	Open in IMG/M
3300032397\|Ga0315287_10523229	All Organisms → cellular organisms → Bacteria → Proteobacteria	1407	Open in IMG/M
3300032401\|Ga0315275_11293140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	790	Open in IMG/M
3300032401\|Ga0315275_12107004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	592	Open in IMG/M
3300032770\|Ga0335085_10122537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3315	Open in IMG/M
3300032782\|Ga0335082_10337186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1377	Open in IMG/M
3300032782\|Ga0335082_11285944	All Organisms → cellular organisms → Bacteria → Proteobacteria	600	Open in IMG/M
3300032828\|Ga0335080_11809311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	596	Open in IMG/M
3300032954\|Ga0335083_10865222	All Organisms → cellular organisms → Bacteria → Proteobacteria	720	Open in IMG/M
3300033004\|Ga0335084_12205005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	533	Open in IMG/M
3300033290\|Ga0318519_10339666	All Organisms → cellular organisms → Bacteria → Proteobacteria	886	Open in IMG/M
3300033413\|Ga0316603_11304995	All Organisms → cellular organisms → Bacteria → Proteobacteria	688	Open in IMG/M
3300033413\|Ga0316603_11611394	All Organisms → cellular organisms → Bacteria → Proteobacteria	615	Open in IMG/M
3300033418\|Ga0316625_100997225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	745	Open in IMG/M
3300033419\|Ga0316601_102131362	All Organisms → cellular organisms → Bacteria → Proteobacteria	565	Open in IMG/M
3300033550\|Ga0247829_10603650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	912	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	64.19%
Host-Associated	Host-Associated	35.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	40.54%
Plants	Host-Associated → Plants	35.81%
Aquatic	Environmental → Aquatic	23.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	39.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.59%
Freshwater	Environmental → Aquatic → Freshwater	16.22%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.54%
Sediment	Environmental → Aquatic → Sediment	4.73%
Marine	Environmental → Aquatic → Marine	2.70%
Peat	Environmental → Terrestrial → Peat	0.68%
Roots	Host-Associated → Plants → Roots	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	25.00%
Soil	Host-Associated → Plants → Rhizosphere → Soil	16.22%
Lake	Environmental → Aquatic → Freshwater → Lake	10.14%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.14%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.46%
Loam	Environmental → Terrestrial → Soil → Loam	5.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.38%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.70%
Soil	Host-Associated → Plants → Rhizoplane → Soil	2.70%
Lentic	Environmental → Aquatic → Freshwater → Lentic	2.03%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.03%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.35%
Coastal	Environmental → Aquatic → Marine → Coastal	0.68%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.68%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	16.22%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	10.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.14%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.46%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.05%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.38%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	2.70%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	2.03%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.35%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.35%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.35%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.68%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.68%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.68%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.68%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.68%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.68%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.68%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.68%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	10.14%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	7.43%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.41%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.38%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.38%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.38%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	2.70%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	2.03%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	2.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.03%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.03%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.03%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.03%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.03%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.35%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.35%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.35%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.35%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.35%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.35%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.68%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.68%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Sediment	0.68%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.68%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.68%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.68%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.68%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.68%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.68%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.68%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.68%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.68%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002128	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental	Open in IMG/M
3300003858	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI	Environmental	Open in IMG/M
3300003861	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR	Environmental	Open in IMG/M
3300004048	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleA_D2	Environmental	Open in IMG/M
3300004057	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004779	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005488	Sediment ecosystem from Lake Washington, Seattle, Washington, USA - Methane enrichment	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005830	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.178_YBM	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006641	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014324	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1	Environmental	Open in IMG/M
3300014880	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_16_10D	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015082	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11c, vegetated hydrological feature)	Environmental	Open in IMG/M
3300015195	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6c, vegetation/snow interface)	Environmental	Open in IMG/M
3300015258	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_1Da	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027840	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300030002	II_Fen_N1 coassembly	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032256	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1091191152	3300001213	Wetland	VSSAAGPTLSLRPHARRALTARAVWHTLGLIAAALLAYAVWRGYQNPDLLLELSAFRLC*
F14TB_1052135792	3300001431	Soil	MGNGTAVPPPSARLRLQRATWHTLGLIVAALLAYAIWRGYQNPDLLLDLSALRLC*
JGI24036J26619_100553752	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	GTATPTFPPPSVRLGFKRATWHTLGLIVAALLAYAIWRGYQNPDLLLDLSALRLC*
Ga0031656_101211442	3300003858	Freshwater Lake Sediment	VRLGTGTPALPPHAARGRITRAMWHTIGLIVAALLAYALWRGYQNPDL
Ga0031654_100048705	3300003861	Freshwater Lake Sediment	VGVAAESTVPRPRLARGRFTRAMWHTLGLILAGLLAYAFWRGYQNPDLLLDLSALRLC*
Ga0055494_100074542	3300004048	Natural And Restored Wetlands	VSPDNGAPALSPRAARGRITRAMWHTIGLVVAALLAYALWRGYQNPDLLLDLSALRLC*
Ga0055496_100417192	3300004057	Natural And Restored Wetlands	VSPDNGAPALSPRAARGRITRAMWHTIGLVVAALLAYALWRGYHNPDLLLDLSALRLC*
Ga0062593_1000393673	3300004114	Soil	MDTAASPTLPDPHPARVRFARGLWHTLALIAAALLAYAVWRGYQSPDLILDLSALRLC*
Ga0062589_1027543411	3300004156	Soil	MATGTATPIVSPSGSRRIQRATWHTLGLIIAALLAYAVWRGYQNPDLLLDLAAFRLC*
Ga0062595_1011992432	3300004479	Soil	VNAAAGSTLPRPSRSRVTRVLWHTLGVVTAALLAYAVWRGYQSPDLILDLSALRLC*
Ga0062595_1016910832	3300004479	Soil	LRVSVETSPSARVRVTRATWHTVGLIIAVLLAYAIWRGYQNPDLLLDLSVLNLC*
Ga0062380_101491312	3300004779	Wetland Sediment	VSPGTGTPALPPHAARGRITRAMWHTIGLIVAALLAYALWRGYQNPDLLLDLSALRLC*
Ga0062380_103376452	3300004779	Wetland Sediment	VSPDTDTPAVSPHAARGRITRAMWHTIGLIVAALLAYALWRGYQNPDLLLDLSALRLC*
Ga0062594_1008998222	3300005093	Soil	MGTGTATPTFPPPSVRLGFKRATWHTLGLIVAALLAYAIWRGYQNPDLLLDLSALRLC*
Ga0070676_100230642	3300005328	Miscanthus Rhizosphere	VDSAASPTLPDPKPSRARLERALWHTLGLLAAALLAYAVWRGYQNPDLILDLSALKLC*
Ga0070676_101856582	3300005328	Miscanthus Rhizosphere	LRVSVETSPSARVRVTRATWHTIGLIVAVLLAYAIWRGYQNPDLLLDLSVLNLC*
Ga0070676_103060242	3300005328	Miscanthus Rhizosphere	MDTGTATPTVSPSGSRRLQRATWHTLGLIVAALLAYAVWRGYQNPDLLLDLAAFRLC*
Ga0070670_1000834563	3300005331	Switchgrass Rhizosphere	MGTGTVTPAIPPPAVRLRFKRATWHTLGLIVAALLAYAIWRGYQNPDLL
Ga0066388_1021920032	3300005332	Tropical Forest Soil	VDAAADPTLPEPHAAASRTRRALWHTLGLIAAVLLAYAVWRGYQNPDLILDLSVLRLC*
Ga0070677_100544803	3300005333	Miscanthus Rhizosphere	LRVSVESSPSARVRVTRATWHTVGLIVAVLLAYAIWRGYQNPDLLLDLSVLNLC*
Ga0070680_1019699242	3300005336	Corn Rhizosphere	ETSPSARVRVTRATWHTVGLIVAVLLAYAIWRGYQNPDLLLDLSVLNLC*
Ga0068868_1003441273	3300005338	Miscanthus Rhizosphere	TGTVTPAIPPPAVRLRFKRATWHTLGLIVAALLAYAIWRGYQNPDLLLDLSALRLC*
Ga0070661_1013946321	3300005344	Corn Rhizosphere	VDSAASPTLPDPKPSRARLERALWHTLGLLAAALLAYAVWRGYQHPDLILDLSALKLC*
Ga0070669_1003039441	3300005353	Switchgrass Rhizosphere	VNATGGSTLPLRARSRVTRVLWHTLGLLTAALLGYAVWRGYQSPDLILELSA
Ga0070675_1002402113	3300005354	Miscanthus Rhizosphere	MGTGTVTPAIPPPAVRLRFKRATWHTLGLIVAALLAYAIWRGYQNPDLLLDLSALRLC*
Ga0070675_1012389632	3300005354	Miscanthus Rhizosphere	VNATGGSTLPLPARSRITRVLWHTLGVVTAALLAYAVWRGYQSPDLILELSALRLC*
Ga0070671_1012950802	3300005355	Switchgrass Rhizosphere	VNATGGSTLPFPARSRITRALWHTLGVLTAALLAYAVWRGYQSPDLILELSALRLC*
Ga0070674_1001818902	3300005356	Miscanthus Rhizosphere	MGTGTATPTFPPPSVGLGFKRATWHTLGLIVAALLAYAIWRGYQNPDLLLDLSALRLC*
Ga0070674_1010171572	3300005356	Miscanthus Rhizosphere	VNATGGSTLPLPARSRVTRVLWHTLGLLTAALLAYAVWRGYQSPDLILELSALRLC*
Ga0070673_1001924042	3300005364	Switchgrass Rhizosphere	VNATGGSTLPFPARSRITRALWHTLGLLTAALLAYAVWRGYQSPDLILELSALRLC*
Ga0070701_100122432	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	LRVSVETSPSARVRVTRATWHTVGLIVAVLLAYAIWRGYQNPDLLLDLSVLNLC*
Ga0070700_1008208062	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	LRVSVESSPFARVRVTRATWHTVGLIVAVLLAYAIWRGYQNPDLLLDLSVLNLC*
Ga0070694_1000940383	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	LRVSVETSPSARVRVTRATWHTIVLIVAVLLAYAIWRGYQNPDLLLDLSVLNLC*
Ga0070678_1016356292	3300005456	Miscanthus Rhizosphere	VDAAAGSTLPRPSRSRLTRVLWHTLGVVTAALLAYAVWRGYQSPDLILDLSALRLC*
Ga0070678_1020729402	3300005456	Miscanthus Rhizosphere	MDTGTATPTVSPSSSRRLQRATWHTLGLIVAALLAYAVWRGYQNPDLLLDLAAFRLC*
Ga0070678_1022387091	3300005456	Miscanthus Rhizosphere	RAMGTRTATPTFPPPSVRLGFKRATWHTLGLIVAALLAYAIWRGYQNPDLLLDLSALRLC
Ga0074213_1471532	3300005488	Sediment	VSPDSGTPALAPRAARGRITRATWHTIGLIVAALLAYAVWRGYQNPDLLLDLSTLRLCQWGQSNLAT*
Ga0070665_1018063892	3300005548	Switchgrass Rhizosphere	MGTGTATPIASPSNSRRIQRATWHTLGLIIAALLAYAVWRGYQNPDLLLDLAAFRLC*
Ga0070664_1006400262	3300005564	Corn Rhizosphere	MGTGTATPVVPPPSMRLRFQRATWHTVGLIVAALLAYAIWRAYQNPDLLLDLSALRLC*
Ga0070702_1012927472	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	LRVSVETSPSARVRVTRATCHTIGLIVAVLLAYAIWRGYQNPDLLLDLSV
Ga0068861_1012602672	3300005719	Switchgrass Rhizosphere	VDSAASPTLPEPKPSRARLERALWHTLGLLAAALLAYAVWRGYQNPDLILDLSALKLC*
Ga0068861_1026979322	3300005719	Switchgrass Rhizosphere	VNATGASTLPLRARSRVTRVLWHTLGLLTAALLAYAVWRGYQSPDLILELSALRLC*
Ga0074479_107189252	3300005829	Sediment (Intertidal)	VSPGTGTPELPPHPARGRITRAMWHTMGLIVAALLAYAIWRGYQNPDLLLDLSALRLC*
Ga0074473_110674172	3300005830	Sediment (Intertidal)	VSPDNGAPALSPRVARGRITRAMWHTIGLVVAALLAYALWRGYQNPDLLLDLSALRLC*
Ga0074470_101233272	3300005836	Sediment (Intertidal)	VSPDNGAPALSPRLARGRITRAMWHTIGLVVAALLAYALWRGYQNPDLLLDLSALRLC*
Ga0068863_1001206793	3300005841	Switchgrass Rhizosphere	LRVSVETSPSARVRVTRATWHTVGLIVAVLLAYAIWRGYQNP
Ga0068858_1009386492	3300005842	Switchgrass Rhizosphere	MRQAVRRFPYARSRVTRVLWHTLGLLTAALLGYAVWRGYQSPDLILELSALRLC*
Ga0097621_1003836231	3300006237	Miscanthus Rhizosphere	VNATGGSTLPFPARSRITRALWHTLGLLTATLLAYAVWRGYQSPDLI
Ga0074055_115577342	3300006573	Soil	VDAAAGPTLPRPHPARSRVTRVLWHTLGVVTAALLAYAVWRGYQSPDLILDLSALRLC*
Ga0075471_103222232	3300006641	Aqueous	VSPDNGAPALSPRVARGRITRAMWHSIGLVVAALLAYALWRGYQNPDLLLDLSALRLC*
Ga0075428_1001184182	3300006844	Populus Rhizosphere	MSIGATPSTRPRVQRATWHTLGLIVAALLAYAIWRGYQNPDLLLDLAAFRLC*
Ga0075425_1007016202	3300006854	Populus Rhizosphere	VDAAADPTLPEPYTARSRTRRALWHTLSLIAAVLLAYAVWRGYQNPDLILDLSALRLC*
Ga0075423_104620232	3300009162	Populus Rhizosphere	VGTAANPTLPEPQPTRARLARALWHTLGLIAAALLAYAVWRGYQSPDLILDLSALRLC*
Ga0113563_113173822	3300009167	Freshwater Wetlands	VSPPADTPSTPPRAARGRITRATWHTIGLIIAALLAYAVWRGYQNPDLLLDLSALRLC*
Ga0105242_108625151	3300009176	Miscanthus Rhizosphere	GSTLPRPSRSRVTRVLWHTLGVVTAALLAYAVWRGYQNPDLILDLSALRLC*
Ga0115028_121059972	3300009179	Wetland	VAIRAEPNASLPHATRGRVMRALAHGIVWVIAALLAYAVWRGYQNPDLLLDLSGLRLC*
Ga0126374_102815412	3300009792	Tropical Forest Soil	VDAATDPTLPEPHAAASRTRRVLWHTLGLIAAALLAYAVWRGYQNPDLILDLSVLRLC*
Ga0126374_117241601	3300009792	Tropical Forest Soil	LPDPHAARSRTRQALWHTLGLIAAALLAYAVWRGYQSPDLILDLSTLRLC*
Ga0126372_124926551	3300010360	Tropical Forest Soil	VNAAADPASPDPYTARSRTRRALWHTLGLIAAALLAYAVWRGYQNPDLILDLSVLRLC*
Ga0134125_126463902	3300010371	Terrestrial Soil	WRVNAAAGSILPRPSRSRVPRVLWHTLGVVTAALLAYAVWRGYQSPDLILDLSALRLC*
Ga0126383_104858562	3300010398	Tropical Forest Soil	VDAAADPVLPDPHAARSRTRRALWHTLGLIAAALLAYAVWRGYQSPDLILDLSTLRLC*
Ga0134127_126212852	3300010399	Terrestrial Soil	MNATGGSTLPYPARSRVTRVLWHTLGLLTAALLGYAVWRGYQSPDLILELSALRLC*
Ga0134122_131026282	3300010400	Terrestrial Soil	LRVSVETSPSARARVTRATWHTVGLILAALLAYAIWRGYQNPDLLLDLSVLNLC*
Ga0126369_131273212	3300012971	Tropical Forest Soil	VNAATDPTLPEPHAAASRTRRALWHTLGLIAAALLAYAVWRGYQNPDLILDLSALRLC*
Ga0163162_105433602	3300013306	Switchgrass Rhizosphere	VRVTRAIGQTVGLIVAVLLAYAIWQHYQTTDRLPDLSV
Ga0075352_10829302	3300014324	Natural And Restored Wetlands	VIPGTGTPAIPPHAARGRITRATWHTIGLIVAALLAYAVWRTYQNPDLLLDLSALRLC*
Ga0180082_10257611	3300014880	Soil	MDTGTATPAVPPPSTRLGLQQATWHTLGLIVAALLAYAVWRGYQNPD
Ga0157376_121879352	3300014969	Miscanthus Rhizosphere	VNATGGSTLPFPARSRVTRVLWHTLGLLTAALLAYAVWRGYQSPDLILDLSALRLC*
Ga0167662_10072942	3300015082	Glacier Forefield Soil	VEPATEPALPQADAAHARLTRGAWHAIGLVLAALLAYAVWRGYQNPDLLIDLSALRLC*
Ga0167658_10046753	3300015195	Glacier Forefield Soil	VEPATEPALPQADAARGRLTRGMWHAIGLVLAALVSYAVWRGYQNPDLVIELSALRLC*
Ga0180093_11879711	3300015258	Soil	MDTGTATPAVPPPSTRLGLQQATWHTLGLIVAALLAYAVWRGYQNPDLLLDLAALRLC*
Ga0132258_101159194	3300015371	Arabidopsis Rhizosphere	LRVSVETSPSARARVARATWHSVGLIVVALLAYAIWRGYQNPDLLLDLSVLNLC*
Ga0132258_127940882	3300015371	Arabidopsis Rhizosphere	LRVSVETSPSVQARVTRATWHTVGLILAALLAYAIWRGYQNPDLLLDLSVLNLC*
Ga0132257_1004992752	3300015373	Arabidopsis Rhizosphere	LRVSVETSPSARARVARATWHSVGLIVAALLAYAIWRGYQNPDLLLDLSVLNLC*
Ga0132257_1005233422	3300015373	Arabidopsis Rhizosphere	VNAAAGSTLPRPSRSRVTRVLWHTLGVVTAALLAYAVWRAYQSPDLILDLSALRLC*
Ga0163161_108734071	3300017792	Switchgrass Rhizosphere	LRVSVESSPSARVRVTRATWHTVGLIVAVLLAYAIWRGYQNPDLLLDLSVLNLC
Ga0187779_102546271	3300017959	Tropical Peatland	VDAAAAPTLPEPHAARSRTRRVLWHTLGLVAAALLAYAVWRGYQSPELILDLSLLRLC
Ga0187779_107589752	3300017959	Tropical Peatland	VDAAAGSHLPEPSAALARARRALWHTLGLIAAALLAYAVWRGYQSPDLILDLSALRLC
Ga0187765_107870242	3300018060	Tropical Peatland	VTPALQPGATPRRARLGRALWHTIGLIVATLLAYAIWRGYQSPDLLLDLSGLRLC
Ga0184628_102419902	3300018083	Groundwater Sediment	MDTGTATPTVSPSGSRRLQRATWHTLGLIVAALLAYAVWRGYQNPDLLLDLAAFRLC
Ga0190274_101123702	3300018476	Soil	MATGTATPIVSPSGSRRIQRATWHTLGLIIAALLAYAVWRGYQNPDLLLDLAAFRLC
Ga0190274_131549462	3300018476	Soil	MNTPAVPPPSTRFSLQRATWHTLGLIAAALLAYAVWRGYQNPDLLLDLSAFRLC
Ga0210379_101494482	3300021081	Groundwater Sediment	VDPVADPTASAPLSGHGRITRATWHAVGLILAALLAYVVWRGYQNPDLLLELSALRLC
Ga0207697_100521091	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MGTGTATPTFPPPSVRLGFKRATWHTLGLIVAALLAYAIWRGYQNPDLLLDLSALRLC
Ga0207697_104185801	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	VNATGGSTLPLPARSRITRVLWHTLGVVTAALLAYAVWRGY
Ga0207642_100103661	3300025899	Miscanthus Rhizosphere	LRVSVETSPSARVRVTRATWHTVGLIVAVLLAYAIWRGYQNPDLLLDLSVLNLC
Ga0207680_105210962	3300025903	Switchgrass Rhizosphere	VDSAASPTLPDPKPSRARLERALWHTLGLLAAALLAYAVWRGYQNPDLILDLSALKLC
Ga0207680_109466842	3300025903	Switchgrass Rhizosphere	MGTGTVTPAIPPPAVRLRFKRATWHTLGLIVAALLAYAIWRGYQNPDLLLDLSALRLC
Ga0207645_100073382	3300025907	Miscanthus Rhizosphere	LRVSVETSPSARVRVTRATWHTIGLIVAVLLAYAIWRGYQNPDLLLDLSVLNLC
Ga0207645_100206661	3300025907	Miscanthus Rhizosphere	SARVRVTRATWHTIGLVVAVLLAYAIWRGYQNPDLLLDLSVLNLC
Ga0207643_111458092	3300025908	Miscanthus Rhizosphere	TVTPAIPPPAVRLRFKRATWHTLGLIVAALLAYAIWRGYQNPDLLLDLSALRLC
Ga0207681_103467032	3300025923	Switchgrass Rhizosphere	MGTGTATPIVSPSGSRRIQRATWHTLGLIIAALLAYAVWRGYQNPDLLLDLAAFRLC
Ga0207650_100010183	3300025925	Switchgrass Rhizosphere	MGTGTATPVVPPPSMRLRFQRATWHTVGLIVAALLAYAIWRAYQNPDLLLDLSALRLC
Ga0207669_118176311	3300025937	Miscanthus Rhizosphere	ALRMDTGTATPAVPPPSTRLSLQRATWHTLGLIVAALLAYAVWRGYQNPDLLLDLAALRL
Ga0207704_119483891	3300025938	Miscanthus Rhizosphere	MGTGTATPTFPPPSVRLGFKRATWHTLGLIVAALLAYAIWRGYQNPDLLLDLSAL
Ga0207668_115886861	3300025972	Switchgrass Rhizosphere	VDSAASPTLPDPKPSRARLERALWHTLGLLAAALLAYAVWRGYQNPDLILDLSAL
Ga0207677_101526601	3300026023	Miscanthus Rhizosphere	TGTVTPAIPPPAVRLRFKRATWHTLGLIVAALLAYAIWRGYQNPDLLLDLSALRLC
Ga0207678_119903502	3300026067	Corn Rhizosphere	SSRVDSAASPTLPDPKPSRARLERALWHTLGLLAAALLAYAVWRGYQNPDLILDLSALKL
Ga0207708_109761712	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MDTAASPTLPDPHPARVRFARGLWHTLALIAAALLAYAVWRGYQSPDLILDLSALRLC
Ga0207648_100987942	3300026089	Miscanthus Rhizosphere	MGTGTATPTFPPPSVGLGFKRATWHTLGLIVAALLAYAIWRGYQNPDLLLDLSALRLC
Ga0207648_107169422	3300026089	Miscanthus Rhizosphere	MDTGTATPTVSPSGSRRLQRATWHTLGLIVAALLAYAVWRGYQNPDL
Ga0207683_117408391	3300026121	Miscanthus Rhizosphere	VDAAAGSTLPRPSRSRLTRVLWHTLGVVTAALLAYAVWRGYQSPDLILDLSALRLC
Ga0209683_101587501	3300027840	Wetland Sediment	TPALPPHAARGRITRAMWHTIGLIVAALLAYALWRGYQNPDLLLDLSALRLC
Ga0209069_100502242	3300027915	Watersheds	VGPLAESNEILPHAARNAVTRNLAHGIAWILAALLAYAVWRGYQNPDLLLDYSGFRLC
Ga0307503_107252592	3300028802	Soil	VDTAADPTGTRSLHARGRLARAVSHSIGLIVAALLAYAVWRGYQNPELLLELSALRLC
Ga0311350_116067211	3300030002	Fen	VFGPSDPTPGHPTSARPSWQRTVAQSAGIALAALLAYAVWRGYQNPDLLLDLAAFRLC
Ga0318516_101584352	3300031543	Soil	VDAADPTLTETHAAASRTRRALWHTLGLIAAALLAYAVWRGYQNPDLILDLSVLRLC
Ga0318534_107877621	3300031544	Soil	VDVADPTLTETHAAASRTRRALWHTLGLIAAALLAYAVWRGYQNPDLILDLSVLRLC
Ga0318515_103881402	3300031572	Soil	VDAAADPTLPEPHAPASRTRRVLWHTLGLIAAALLAYAVWRGYQNPDLILDLSVLRLC
Ga0318555_102655602	3300031640	Soil	VDAAADPTLPEPHAPASRTRRVLWHTLGLIAAALLAYAVWRGYQSPELILDLSVLRLC
Ga0307469_100333683	3300031720	Hardwood Forest Soil	VDAAADPTLPERHAAASRTRRVLWHTLGLIAAALLAYAVWRGYQSPELILDLSALRLC
Ga0307469_102079242	3300031720	Hardwood Forest Soil	VDAAADPTLPEPYAARSRTRRALWHTLSLIAAVLLAYAVWRGYQNPDLILDLSALRLC
Ga0307469_110988602	3300031720	Hardwood Forest Soil	VDAAADPTVPRPLPARSRITRALWHSLGLVVAALLAYAVWRGYQSPDLLLDLSALRLC
Ga0307473_100469512	3300031820	Hardwood Forest Soil	VDAAADPTLPEPYAARSRTRRALRHTLGLIAAALLAYAVWRGYQNPDLILDLSAVRLC
Ga0315297_100761662	3300031873	Sediment	VSPDYVTPALPPRAVRGRITRATWHTIGLIAAALLAYAVWRGYQNPDLLLDLSALRLC
Ga0315297_104078883	3300031873	Sediment	VRLGTGTPALPPHAARGRITRAMWHTIGLIVAALLAYALWRGYQNPDLLLELSALRLC
Ga0315297_104701091	3300031873	Sediment	LPPHAARGRITRAMWHTIGLIVATLLAYALWRGYQNPDLLLDLSALRLC
Ga0306919_106390402	3300031879	Soil	VDVADPTLTETHAAASRTRRALWHTLGLIAAALLAYAVWRGYQSPELILDLSVLRLC
Ga0310910_105677081	3300031946	Soil	VDVADPTLTETHAAASRTRRALWHTLGLIAAALLAYAVWRGYQNPDLI
Ga0214473_112794351	3300031949	Soil	VSPDTGTPAVPPHAARGRVTRTTWHTIGLILAALLAYAVWRSYQNPDLLLDLSALRLC
Ga0315278_102736072	3300031997	Sediment	VAAATEPTISRPHAARGHITRAMWHTIGLVLAALLAYAVWRGYQNPDLLLDLSALRLC
Ga0315278_120952632	3300031997	Sediment	EPQRARGTITRAMWHTVGLILAALLAYAVWRGYQNPDLLLELSALRLC
Ga0318562_101921312	3300032008	Soil	VDAAADPTLPEPHAPASRTRRALWHTLGLIAAALLAYAVWRGYQNPELILDLSVLRLC
Ga0318563_100302533	3300032009	Soil	VDAAADPTLPEPHAPASRTRRVLWHTLGLIAAALLAYAVWRGYQSPELILDLSVL
Ga0310906_113005831	3300032013	Soil	MDTGTATPAVPPPSTRLSLQRATWHTLGLIVAALLAYAVWRGYQNPDLLLDLAALRLC
Ga0315281_107357732	3300032163	Sediment	VSPDSGTPALAPRAARGRITRATWHTIGLIVAALLAYAVWRGYQNPDLLLDLST
Ga0315281_113759372	3300032163	Sediment	VSLGTGTPALPPHTARGRITRAMWHTIGLIVAALLAYALWRGYQNPDLLLDLSALRLC
Ga0315283_122650122	3300032164	Sediment	VCPAADSTAALRPPAPRARLARAAGHSIGLIVAALLAYAVWRGYQNPDLLLDLAAFRLC
Ga0307470_113057932	3300032174	Hardwood Forest Soil	VDAAADPTLPEPHAARSRTRRALWHTLGLIAAALLAYAVWRGYQSPELILDLSMLRLC
Ga0315276_120372162	3300032177	Sediment	VSPDFARPALPPRAARGRLTRATWHTIGLILAALLAYAVWRGYQNPDLLLDLSALRLC
Ga0315276_123004221	3300032177	Sediment	PHSARGRITRAMWHTIGLIVATLLAYALWRGYQNPDLLLDLSALRLC
Ga0315271_100525402	3300032256	Sediment	VSPDSGTPGLPPHAARGHITRATWHTIGLIVAALLAYAVWRGYQNPDLLLDLSVLRLC
Ga0315271_101881363	3300032256	Sediment	VSPDSGTPALAPRAARGRITRATWHTIGLIVAALLAYAVWRGYQNPDLLLDLSTLRLCQWGQSNLAT
Ga0315287_105232293	3300032397	Sediment	TDPCASEPRRARGTLTRAMWHTIGLILATLLAYMVWRSYQNPDLLLELSALRLC
Ga0315275_112931402	3300032401	Sediment	VSPDSGTPALAPRAARGRITRATWHTIGLIVAALLAYAVWRGYQNPDLLLGLS
Ga0315275_121070041	3300032401	Sediment	VAAATEPTISRPHAARGHITRAMWHTIGLILAALLAYAVWRGYQNPDLLLDLSALRLC
Ga0335085_101225373	3300032770	Soil	VDAAADPDLPEPHAARARTRRVLWHTLGLIAAALLAYAVWRGYQNPDLIIDLSVLRLC
Ga0335082_103371862	3300032782	Soil	VDAAAGSHLPEPSAALARARRAFWHTLGLIAAALLAYAVWRGYQSPDLILDLSALRLC
Ga0335082_112859442	3300032782	Soil	LPRGRNLRRVTPATEPTGTPPRARLTRAMWHTIGLIVATLLAYAIWRGYQNPDLLLDLSGLRLC
Ga0335080_118093111	3300032828	Soil	VDAAANPTLPEPHAAHSRTRRALWHTLGLIAAVLLAYAVWRGYQSPDLILDLSALRLC
Ga0335083_108652222	3300032954	Soil	ASRVDAAADPDLPEPHAARARTRRVLWHTLGLIAAALLAYAVWRGYQNPDLIIDLSVLRL
Ga0335084_122050052	3300033004	Soil	MGTGTAAPVVPPPSTRLRFQRATWHTLGLIVAALLAYAIWRGYQNPDLLLDLSMLR
Ga0318519_103396661	3300033290	Soil	PHAPASRTRRVLWHTLGLIAAALLAYAVWRGYQNPDLILDLSVLRLC
Ga0316603_113049952	3300033413	Soil	PVAGTPATPPRAARGHIDRATWHTIGLIVAALLAYAVWRGYQNPDLLLDLSALRLC
Ga0316603_116113941	3300033413	Soil	EPTIARPHAARGHITRAMWHTIGLILAALLAYAVWRGYQNPDLLLDLSALRLC
Ga0316625_1009972252	3300033418	Soil	VAIRAEPNASLPHATRGRVMRALAHGIVWVIAALLAYAVWRGYQNPDLLLDLSGLRLC
Ga0316601_1021313622	3300033419	Soil	HAARGRITRAMWHTIGLIIAALLAYALWRGYQNPDLLLDLSALRLC
Ga0247829_106036502	3300033550	Soil	MGTGTATPTFPPPSVRLGFKRATWHTLGLIVAALLAYAIWRGYQNPDLL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F048380

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences