NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268251_10000007

Scaffold Ga0268251_10000007


Overview

Basic Information
Taxon OID3300032159 Open in IMG/M
Scaffold IDGa0268251_10000007 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)328409
Total Scaffold Genes318 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)237 (74.53%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002582Metagenome / Metatranscriptome546Y
F024633Metagenome / Metatranscriptome205Y
F047346Metagenome / Metatranscriptome150Y
F077272Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0268251_1000000711F024633GGAVARKTIFVSDFSQKEIPDDKQSVQVVLRYADGRRGQIVADGHVDDDVVKQIARVGKQQARRGRRPKESQ
Ga0268251_10000007162F047346GGAGMGRFVGRENVRKRLATLEGEQGRTIYADGAARLELPDVRVGA
Ga0268251_10000007239F077272N/AVTRAAFAIAGLLFALVPRGHDFTVSEAQRAFRNHTGLPLVRFAAASTAEVTSLRTRPHNTRRFGEFQLFVLKPSRVRQLRRVFTHGTRADRRGVHWVPDQAGGWIAVSLHRRNLVLAWFAPSPSRTTDARWTRLRRAVAAFAPPV
Ga0268251_10000007293F002582GGGGGMLVCLFQLRAAQTLAEAVPWGRVAGKTAKAFPVAILGLFGTGAYMTSDVWTWSTGWIDVSIAGLVVLALQGPLVAEHTAKKLQGALRENGPGPLGRHALRMARHPGLWIVDLSNLGVVLGVVWDMTQKAGTASSIAAVVGGYLVGAAVALPFTRLPAEELAPATETAS
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