| Basic Information | |
|---|---|
| Taxon OID | 3300032118 Open in IMG/M |
| Scaffold ID | Ga0315277_10024224 Open in IMG/M |
| Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7326 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (17.65%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5099 | Long. (o) | -110.3566 | Alt. (m) | Depth (m) | 103 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000710 | Metagenome / Metatranscriptome | 925 | Y |
| F002259 | Metagenome / Metatranscriptome | 577 | Y |
| F006697 | Metagenome / Metatranscriptome | 366 | Y |
| F008615 | Metagenome / Metatranscriptome | 330 | N |
| F016114 | Metagenome / Metatranscriptome | 249 | Y |
| F025444 | Metagenome | 201 | N |
| F026828 | Metagenome | 196 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315277_1002422410 | F025444 | N/A | MYLQLAGLEPLDTAENPLAPGAATYKYKNYYLGQGQDIILPDALFPPNVEGYAAALKSVADLYGKFSKGKKTPAAVVQTPGMGVDPATLMLIAKGIYAGVQALSVVFRGQVTTAARQRITELYNGNNFNVQNLNRMTAKQISDAITQIDNQINMTPRTQFGRQMALARFRLVYQQRFDQVSGGGGFLTALPGWVLPAALGLGAVLILRGRK |
| Ga0315277_1002422413 | F016114 | GGA | MIIKDWQAAFFDSRDVETINEMAAMARRMLISQRELQRDELLRLKMKYPHLTTKD |
| Ga0315277_1002422415 | F008615 | N/A | MNTPNTFGAKMFGRFISKGWHISFTDSYQDRVCVIPPERLDAQHVFGIYIPVMRHTWQPDLKREWWAALQTKDCMLGPKFEATAHPDDIERFAAFAAWIGDLLRNPEKFT |
| Ga0315277_1002422417 | F026828 | N/A | MITEELIANAIAFLAGWILKRPDFVQKILSKLFTKKHK |
| Ga0315277_100242245 | F000710 | N/A | MATNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGLLLSSTTSAAPATLVNATQLRVTLTINNDVVIDDVIAHDLGASVNGGVTTGFPAFVPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI |
| Ga0315277_100242246 | F006697 | N/A | MANQVQKLSYVDNKLGVSLPGQQTTRVIYDSVNAVAAQGFFEFFTNFAGKNEFQTNLTTNKLDSAESMVIKSIQIIGAFGGSPTPATLANHMNLNILVGNQVVVKDFDPSFNATNRGLAFDRLHSGANLADNIEIRLLTEIVIPPQVNFKATLQLADGANIALNDDITIVFKGYGRIFSAGNSF |
| Ga0315277_100242247 | F002259 | N/A | MGMSAQDKMLNVASRLGLTTLKDMQGTTRMVYDSQTTAALTHIFFKGASQRAFPLSNVGANGNQFQVNEALLVEKIGFFIPLSETGVTYQGLNGASVKFDLVIGNKTVIKDATVEFGGEQAFYNDGATASSVIDLEGVGILIPPQVEYYVVAKGFGTGARAAASVRLGCYLFGTGALLNFNTTI |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |