NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315274_10793005

Scaffold Ga0315274_10793005


Overview

Basic Information
Taxon OID3300031999 Open in IMG/M
Scaffold IDGa0315274_10793005 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1006
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5119Long. (o)-110.3577Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005344Metagenome403Y
F033723Metagenome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0315274_107930051F005344N/ANQIATILAQVLFNTWQQVPAALTWAAYDPTVTWANAENNGYGEIDTPGNYELAQRASNRTVVYDLVSALATSGLGYLYEDASGLISYGDSTHRTTYLATYGYTDLTANQALGRGITIKTRAGDVRNDITIKYGTLSANEVSDTDATSISTYGDLAQIITTTIKHAADATSQAAFYLALRAYPQPIFDSITYALTNPELDNADRDALINVFMGQPIALNDLPSNMSSGVFQGFVEGWTFRASYNQLDVTLLMSPLAYSLQAMTWSDVPIVETWTTVSPTLDWANATIVS
Ga0315274_107930052F033723AGGAMANPTTYFGWVMPNSADLVTDLPADFNVFGQGVDTSMQYLL

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