NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315294_10527739

Scaffold Ga0315294_10527739


Overview

Basic Information
Taxon OID3300031952 Open in IMG/M
Scaffold IDGa0315294_10527739 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1073
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014487Metagenome / Metatranscriptome262Y
F029043Metagenome189Y
F035218Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0315294_105277391F035218N/AIDSFLFASGRMKMYRVGLAGSYTKVTGTGGVASIGNTGGFNMNLNAGSAANGTSKIGYLDPTAALMTASAGKIDYSKRIRFSMGGMMYLASTNSVIRMVFGGTGNATDAPLAGVNGLTIKGFGAEFALQSGVIQARLIGFDSSYLTPTSYTTLTNGFGLASSDNRFFGVVIESDGAGNIYLYGADSQTNPAINIGQTPLLTLTGGPTNDTSTNRFGPEIHCSNSSSLPTSSPSAILQSTHWLLDVQ
Ga0315294_105277392F014487GGAMPLLLLTLLLCSCSPKTDNTGLPNYEYGDMQAAEDAGRTPSK
Ga0315294_105277393F029043AGGMSKDEQACKALQYLLDEGFISLGYIDGKPAVYLTTSLLEARKAISKLVSNDSADWWK
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