NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315285_10354600

Scaffold Ga0315285_10354600


Overview

Basic Information
Taxon OID3300031885 Open in IMG/M
Scaffold IDGa0315285_10354600 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1070
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.508Long. (o)-110.3268Alt. (m)Depth (m)93
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014487Metagenome / Metatranscriptome262Y
F035218Metagenome / Metatranscriptome172Y
F046196Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0315285_103546001F014487GGAMPLLLLALLLCSCSPRPVENTGLPNYSDMQAAEDAGKTPSP
Ga0315285_103546002F035218AGGAGGMPLVKNPSNIDSILFSTGRLRTGRVGPAGVYTKATGTGATAAVANTAGLLMTINAGTAASSTGKVGYLDPTVSQMTASLGLIDYSRRIRFSIGGQMGMASTNSVIRIVFGGTGSATDAPLAGVNGLTAKGFGAEFAVQSGVIQARLIGFNASYLTPTSYTTLTNGFGLAASDTRFFGVVIESDGGGNINLYGADSQTTPIINIGQTPLLTLTGGPTNSTSSNRNGPEVHCSNSSSLPTNSPSAIFQSTFWLLDVQ
Ga0315285_103546003F046196N/AEGAGNLHITLGTATTSTSSYTVRLSAGDYYEVPANYTGLIGGIFATAGTARVTEVS
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