| Basic Information | |
|---|---|
| Taxon OID | 3300031773 Open in IMG/M |
| Scaffold ID | Ga0315332_10000111 Open in IMG/M |
| Source Dataset Name | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 28264 |
| Total Scaffold Genes | 40 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (22.50%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 36.7468 | Long. (o) | -122.0193 | Alt. (m) | Depth (m) | 100 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008497 | Metagenome / Metatranscriptome | 332 | Y |
| F023594 | Metagenome | 209 | Y |
| F031873 | Metagenome | 181 | N |
| F045103 | Metagenome / Metatranscriptome | 153 | N |
| F060921 | Metagenome | 132 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315332_100001111 | F031873 | N/A | DVTYKPTDSYNTLWDFTYKRNDKKYYCEMKQRNFTLDYAMEKYTEGLLLEAHKYERILRRTKNEKSAQGLYFNFFSDDKALVFNLNKIKIDKWMWRTMPESTEFTKRKFVYKYVTFLDYSKGKLFYI |
| Ga0315332_1000011110 | F008497 | GAGG | MCLDNTTFNKLIPTELVATYGIPEYDEEGIQNGVIHPTFKELGEYNRRKFGANPMVKIGNAKFYIIELEASWLDGELSALLKLGKNKAYPKNCLMTRSEAAKFVRDNANDIDNI |
| Ga0315332_1000011127 | F045103 | GGA | MTTRKFSLSKGEIITLHQSSVRAICSSVLSNNQDYHLLDDLVQDINVILLSQMSETIESLHETNQLEYFVARVVVNQVLSTSSPFHTTYRLKQPKTPLKSDDYDSLPDRLWEEVFKLESQKAKDIVYLRFEYGLKIQEIAKIKGCSIRYIHKVLARSLKKIKNNSKN |
| Ga0315332_1000011134 | F023594 | N/A | MYTYKVKQTEKRTYFFNLIKKDVTKVYLFDTYNEALIFCLSEEIKQFTCIVSDKVQTTRKTYKNYLTLKEFVKVATKNPMWYLGTQTVKCNLSNYYFYLIGSNKLNKLIKFSK |
| Ga0315332_1000011137 | F060921 | N/A | MMNQNQILLDRIKPMIFRLYNANESVKASKVSVTTNNYIKSFDGINYPNLNYKLHLTNGDVVTKKELAFEYNSIIESMVRHVYNNSHNTILKV |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |