| Basic Information | |
|---|---|
| Taxon OID | 3300031539 Open in IMG/M |
| Scaffold ID | Ga0307380_10121736 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Risofladan, Vaasa, Finland - UN-3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2643 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (100.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Finland: Risofladan, Vaasa | |||||||
| Coordinates | Lat. (o) | 63.0472 | Long. (o) | 21.7116 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004646 | Metagenome / Metatranscriptome | 429 | Y |
| F065666 | Metagenome / Metatranscriptome | 127 | Y |
| F090246 | Metagenome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307380_101217362 | F065666 | AGGAG | MTKEDFFEALWQMVKDTDVDYQELMDTDDEGGVYIRFTNLETEE |
| Ga0307380_101217365 | F004646 | GGAGG | MIYAIADVPHADYDNYDTLNKLFHALSPHGWKHSIDDTCPSLYKEERHGNTCRIFVEYVDPDKREYHHWSVLSYQCHDAEGCLTFHEEFDNVDKLIIYLTKRLN |
| Ga0307380_101217368 | F090246 | GAGG | MRSFYLYHGFDRETVLDTVYSAGEARQQAHKWAKQLGTVSVRDALGGLVMVINKGMKEGE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |