NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307439_1020891

Scaffold Ga0307439_1020891


Overview

Basic Information
Taxon OID3300031356 Open in IMG/M
Scaffold IDGa0307439_1020891 Open in IMG/M
Source Dataset NameSalt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-90
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2761
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.759Long. (o)-70.891Alt. (m)Depth (m).9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043157Metagenome / Metatranscriptome157Y
F094910Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0307439_10208911F094910AGGAGGVRKLISIGVILALLVTFMVPVVVGAQDECENPCDYDAPECGPLPAKTTKTLAGAAVWTYLGVQDIMGRAVCATTGQMACNLGGWSDELGVIAVDVSAQVLDGVAGLVEAAIGQFLPDFEDLGASVADMLRGIAEAIGGTAE
Ga0307439_10208912F043157GGAGGMRILDKRFRDCICLNIYDRTDSMQMLGELIMIKGARSLERRIR

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