NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0299907_10745968

Scaffold Ga0299907_10745968


Overview

Basic Information
Taxon OID3300030006 Open in IMG/M
Scaffold IDGa0299907_10745968 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)744
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046396Metagenome / Metatranscriptome151Y
F097419Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0299907_107459682F046396GAGVSQPPDPTEAVYLPKVSVFPALVALGLAAVIVGLYSWFPYSIAGGVIALGSLIAWLRTNRDEIARMPRRQPTDTAPIPLSVYAPRD
Ga0299907_107459683F097419N/AIARYRVRPMDRERVRATIKAGMVASSLALLVFALAFYVSILYLR

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