NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F097419

Metagenome / Metatranscriptome Family F097419

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F097419
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 37 residues
Representative Sequence VDRERARATIRAGMVAGSLALLVFALAFYVSILYLR
Number of Associated Samples 77
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 78.85 %
% of genes near scaffold ends (potentially truncated) 14.42 %
% of genes from short scaffolds (< 2000 bps) 77.88 %
Associated GOLD sequencing projects 72
AlphaFold2 3D model prediction Yes
3D model pTM-score0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (60.577 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(17.308 % of family members)
Environment Ontology (ENVO) Unclassified
(25.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(52.885 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 53.12%    β-sheet: 0.00%    Coil/Unstructured: 46.88%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.57
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF00571CBS 29.81
PF01040UbiA 24.04
PF00034Cytochrom_C 4.81
PF02628COX15-CtaA 2.88
PF00313CSD 1.92
PF12680SnoaL_2 1.92
PF04075F420H2_quin_red 1.92
PF00115COX1 1.92
PF08044DUF1707 0.96
PF11780DUF3318 0.96
PF09991DUF2232 0.96
PF12270Cyt_c_ox_IV 0.96
PF00116COX2 0.96
PF00694Aconitase_C 0.96
PF12212PAZ_2 0.96
PF00892EamA 0.96
PF02470MlaD 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG1612Heme A synthaseCoenzyme transport and metabolism [H] 2.88
COG1622Heme/copper-type cytochrome/quinol oxidase, subunit 2Energy production and conversion [C] 0.96
COG4263Nitrous oxide reductaseInorganic ion transport and metabolism [P] 0.96

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms60.58 %
UnclassifiedrootN/A39.42 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000956|JGI10216J12902_101407815All Organisms → cellular organisms → Bacteria1831Open in IMG/M
3300000956|JGI10216J12902_108079502Not Available742Open in IMG/M
3300000956|JGI10216J12902_113721332All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium667Open in IMG/M
3300000956|JGI10216J12902_115303087All Organisms → cellular organisms → Bacteria781Open in IMG/M
3300000956|JGI10216J12902_122167333All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium639Open in IMG/M
3300001686|C688J18823_10096498All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales2053Open in IMG/M
3300001686|C688J18823_10130781All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1732Open in IMG/M
3300001686|C688J18823_10220754All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1271Open in IMG/M
3300001686|C688J18823_10668548All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales661Open in IMG/M
3300004114|Ga0062593_100236990All Organisms → cellular organisms → Bacteria1493Open in IMG/M
3300004157|Ga0062590_101210270All Organisms → cellular organisms → Bacteria737Open in IMG/M
3300005529|Ga0070741_10018577All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria11241Open in IMG/M
3300005562|Ga0058697_10202647Not Available900Open in IMG/M
3300005562|Ga0058697_10381311Not Available694Open in IMG/M
3300005713|Ga0066905_100116730All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1852Open in IMG/M
3300005713|Ga0066905_101094989All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales707Open in IMG/M
3300005764|Ga0066903_100189640All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia3051Open in IMG/M
3300005937|Ga0081455_10012775All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album8349Open in IMG/M
3300005937|Ga0081455_10037395All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album4312Open in IMG/M
3300005937|Ga0081455_10854604All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria568Open in IMG/M
3300005981|Ga0081538_10111936All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1337Open in IMG/M
3300005981|Ga0081538_10150275All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1056Open in IMG/M
3300005981|Ga0081538_10160524Not Available1000Open in IMG/M
3300005985|Ga0081539_10497231All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300006038|Ga0075365_10768516All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album680Open in IMG/M
3300006046|Ga0066652_100193255All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1746Open in IMG/M
3300006358|Ga0068871_101876374All Organisms → cellular organisms → Bacteria569Open in IMG/M
3300006572|Ga0074051_10011917All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia2273Open in IMG/M
3300006574|Ga0074056_11633436All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales585Open in IMG/M
3300006575|Ga0074053_12017024All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1015Open in IMG/M
3300006579|Ga0074054_11888865All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria516Open in IMG/M
3300006579|Ga0074054_12028837All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1037Open in IMG/M
3300006605|Ga0074057_12250730All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria871Open in IMG/M
3300006845|Ga0075421_100447566All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1544Open in IMG/M
3300006881|Ga0068865_101155008All Organisms → cellular organisms → Bacteria684Open in IMG/M
3300006954|Ga0079219_10028688All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia2170Open in IMG/M
3300006954|Ga0079219_10571320All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei817Open in IMG/M
3300009143|Ga0099792_10465714All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia785Open in IMG/M
3300009147|Ga0114129_10598238All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium1429Open in IMG/M
3300009789|Ga0126307_10000083All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia52596Open in IMG/M
3300009789|Ga0126307_10005957All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia8567Open in IMG/M
3300009789|Ga0126307_10008760All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia7281Open in IMG/M
3300009789|Ga0126307_10056296All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia3078Open in IMG/M
3300009789|Ga0126307_10261852All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1390Open in IMG/M
3300010036|Ga0126305_10618319Not Available729Open in IMG/M
3300010038|Ga0126315_11126147Not Available531Open in IMG/M
3300010039|Ga0126309_10031528All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia2413Open in IMG/M
3300010041|Ga0126312_10006619All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia7800Open in IMG/M
3300010166|Ga0126306_10130327All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1851Open in IMG/M
3300010166|Ga0126306_11148575Not Available637Open in IMG/M
3300010362|Ga0126377_13241861Not Available526Open in IMG/M
3300010397|Ga0134124_12299152Not Available580Open in IMG/M
3300012021|Ga0120192_10083801All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium622Open in IMG/M
3300012198|Ga0137364_10323361Not Available1148Open in IMG/M
3300012200|Ga0137382_10509753Not Available855Open in IMG/M
3300012204|Ga0137374_10027865All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei6242Open in IMG/M
3300012355|Ga0137369_10682320Not Available707Open in IMG/M
3300012469|Ga0150984_104669685Not Available537Open in IMG/M
3300012469|Ga0150984_119284071Not Available955Open in IMG/M
3300012907|Ga0157283_10225151Not Available607Open in IMG/M
3300012911|Ga0157301_10274846All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae603Open in IMG/M
3300012924|Ga0137413_10466938Not Available922Open in IMG/M
3300012960|Ga0164301_10730975All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium748Open in IMG/M
3300012989|Ga0164305_10063246All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales2228Open in IMG/M
3300015242|Ga0137412_11131769Not Available553Open in IMG/M
3300015371|Ga0132258_10023860All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia13446Open in IMG/M
3300015373|Ga0132257_100999093All Organisms → cellular organisms → Bacteria1053Open in IMG/M
3300017965|Ga0190266_10209042Not Available941Open in IMG/M
3300018073|Ga0184624_10280014Not Available748Open in IMG/M
3300018469|Ga0190270_10386077Not Available1290Open in IMG/M
3300020021|Ga0193726_1200725Not Available839Open in IMG/M
3300024288|Ga0179589_10180852Not Available914Open in IMG/M
3300024347|Ga0179591_1090444All Organisms → cellular organisms → Bacteria2408Open in IMG/M
3300024347|Ga0179591_1221332All Organisms → cellular organisms → Bacteria2514Open in IMG/M
3300025552|Ga0210142_1001665All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia4392Open in IMG/M
3300025914|Ga0207671_10110273Not Available2093Open in IMG/M
3300025927|Ga0207687_10341709All Organisms → cellular organisms → Bacteria1217Open in IMG/M
3300027775|Ga0209177_10460522Not Available522Open in IMG/M
3300027909|Ga0209382_10198641All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium2300Open in IMG/M
3300028589|Ga0247818_11195633Not Available543Open in IMG/M
3300028708|Ga0307295_10197717All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium569Open in IMG/M
3300028755|Ga0307316_10334505Not Available556Open in IMG/M
3300028782|Ga0307306_10250107Not Available519Open in IMG/M
3300028803|Ga0307281_10168113All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae776Open in IMG/M
3300028828|Ga0307312_11201111Not Available501Open in IMG/M
3300028881|Ga0307277_10372554Not Available637Open in IMG/M
3300028885|Ga0307304_10443655Not Available590Open in IMG/M
3300030006|Ga0299907_10242859Not Available1480Open in IMG/M
3300030006|Ga0299907_10745968Not Available744Open in IMG/M
3300030606|Ga0299906_10213023All Organisms → cellular organisms → Bacteria1523Open in IMG/M
3300030606|Ga0299906_10331463Not Available1185Open in IMG/M
3300031740|Ga0307468_100029450All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia2590Open in IMG/M
3300031938|Ga0308175_103030823Not Available523Open in IMG/M
3300032159|Ga0268251_10333469Not Available639Open in IMG/M
3300032159|Ga0268251_10358159All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae621Open in IMG/M
3300032174|Ga0307470_10140303Not Available1461Open in IMG/M
3300032174|Ga0307470_11148438Not Available628Open in IMG/M
3300033291|Ga0307417_10090809Not Available1239Open in IMG/M
3300033433|Ga0326726_10554677Not Available1102Open in IMG/M
3300033550|Ga0247829_10902747Not Available735Open in IMG/M
3300033550|Ga0247829_11741510Not Available514Open in IMG/M
3300033815|Ga0364946_111855All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae613Open in IMG/M
3300034090|Ga0326723_0034900All Organisms → cellular organisms → Bacteria2098Open in IMG/M
3300034177|Ga0364932_0046921All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium1626Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil17.31%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil10.58%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil9.62%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil5.77%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil5.77%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil3.85%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil3.85%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere3.85%
AgaveHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave3.85%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil2.88%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.88%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.88%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere2.88%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.88%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.92%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil1.92%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment1.92%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.92%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere1.92%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh0.96%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.96%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.96%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.96%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.96%
TerrestrialEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial0.96%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.96%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.96%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere0.96%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.96%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.96%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.96%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300001686Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005562Agave microbial communities from Guanajuato, Mexico - As.Ma.eHost-AssociatedOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300005981Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1Host-AssociatedOpen in IMG/M
3300005985Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2Host-AssociatedOpen in IMG/M
3300006038Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5Host-AssociatedOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006572Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006574Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006575Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006579Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006605Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009789Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28EnvironmentalOpen in IMG/M
3300010036Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26EnvironmentalOpen in IMG/M
3300010038Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106EnvironmentalOpen in IMG/M
3300010039Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56EnvironmentalOpen in IMG/M
3300010041Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104AEnvironmentalOpen in IMG/M
3300010166Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300012021Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T1EnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012907Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1EnvironmentalOpen in IMG/M
3300012911Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2EnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300017965Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 TEnvironmentalOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300020021Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1EnvironmentalOpen in IMG/M
3300024288Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungalEnvironmentalOpen in IMG/M
3300024347Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300025552Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300027775Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028589Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1EnvironmentalOpen in IMG/M
3300028708Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152EnvironmentalOpen in IMG/M
3300028755Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356EnvironmentalOpen in IMG/M
3300028782Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193EnvironmentalOpen in IMG/M
3300028803Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120EnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300028881Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116EnvironmentalOpen in IMG/M
3300028885Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185EnvironmentalOpen in IMG/M
3300030006Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67EnvironmentalOpen in IMG/M
3300030606Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300032159Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)Host-AssociatedOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300033291Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-10EnvironmentalOpen in IMG/M
3300033433Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MNEnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M
3300033815Sediment microbial communities from East River floodplain, Colorado, United States - 31_s17EnvironmentalOpen in IMG/M
3300034090Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00NEnvironmentalOpen in IMG/M
3300034177Sediment microbial communities from East River floodplain, Colorado, United States - 17_j17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_10140781523300000956SoilVDRERARATIRAGMIVGSLALLIFALAFYISVLYLR*
JGI10216J12902_10807950223300000956SoilMDRERSRALIKSGMIASSLALLVFGLAFYISILYLR*
JGI10216J12902_11372133223300000956SoilMDRERARSTIRAGLVAGSLALLVFGLAFYISILYLR*
JGI10216J12902_11530308723300000956SoilVDRERARATIRAGMVTACLALLVFALAFYVAIIYLR*
JGI10216J12902_12216733333300000956SoilRYRVSAVDRDRARATIRAGMVAGSLALLVFALAFYISILYLR*
C688J18823_1009649813300001686SoilAMDRERARANIRAGMLFSCLALLVFALAFYVSIVYLR*
C688J18823_1013078143300001686SoilMDRERARSNIRAGMXTASLALLVFALAFYVAILYLR*
C688J18823_1022075423300001686SoilVDRERARANIRAGMVAASLALLVFALAFYVAILYLR*
C688J18823_1066854823300001686SoilMDRERARATIRAGLVTASLAMLVFALVFYISVLYLR*
Ga0062593_10023699013300004114SoilVDRVSAVDRERSRALIKSGMVAGSLALLVFGLAFYISVLYLR*
Ga0062590_10121027013300004157SoilVDRVSAVDRERARGLIKSGMFAGSLALLVFGLAFYISVLYLR*
Ga0070741_10018577143300005529Surface SoilVDRERARATIRAGMVAASLALLVFALAFYVSILYLR*
Ga0058697_1020264723300005562AgaveVDRERARALIKSGMIASSLALLVFALAFYVSIIYLR*
Ga0058697_1038131133300005562AgaveVDRERARATIKTGLVAASLALLVFALAFYVSILYLR*
Ga0066905_10011673023300005713Tropical Forest SoilVDRERARALIKSGMVASSLALLVFALAFYISVLYLR*
Ga0066905_10109498923300005713Tropical Forest SoilVDRERARGLIKSGMIASSLALLVFALAFYISILYLR*
Ga0066903_10018964053300005764Tropical Forest SoilDRERARATIRSGMLWASLALLFFGLAFYVSILYLR*
Ga0081455_1001277533300005937Tabebuia Heterophylla RhizosphereMDRERARANIRSGMIAASLALLVFALAFYVAIIYLR*
Ga0081455_1003739543300005937Tabebuia Heterophylla RhizosphereVDRDRARATIRAGMVTASLALLVFALAFYVAVLYLR*
Ga0081455_1085460413300005937Tabebuia Heterophylla RhizosphereFPPMDRERARANIRSGMIAASLALLVFALAFYVAIIYLR*
Ga0081538_1011193623300005981Tabebuia Heterophylla RhizosphereVDRERARATIKAGMVAATLALLVFALAFYVSIIYLR*
Ga0081538_1015027533300005981Tabebuia Heterophylla RhizosphereVDRERARATIKAGMVAGSLALLVFALVFYISILYLR*
Ga0081538_1016052413300005981Tabebuia Heterophylla RhizosphereGYRLPAVDRERARATIKAGMVAASLALLVFALAFYISILYLR*
Ga0081539_1049723123300005985Tabebuia Heterophylla RhizosphereVDRERARATIRAGMVAGSLALLVFALAFYVSILYLR*
Ga0075365_1076851623300006038Populus EndosphereVDRERARANIRAGMLFSCLALLVFALAFYVSIVYLR*
Ga0066652_10019325533300006046SoilVDRERARALIKSGMIASSLALLVFALAFYISVLYLR*
Ga0068871_10187637423300006358Miscanthus RhizosphereMDRERSRATIRAGMVAGGLALLVFALAFYVSILYLR*
Ga0074051_1001191753300006572SoilVDRERARATLRAGMIGASLALLVFALAFYVSILYLR*
Ga0074056_1163343623300006574SoilVDRERARTNIRAGMVAGSLALLVFALAFYVAIVYLR*
Ga0074053_1201702423300006575SoilVDRERARANIRAGMIAGSVALLVFALAFYISILYLR*
Ga0074054_1188886523300006579SoilMPSDRLRAVDRERARANIRAGMIAGGLALLVFALAFYISILYLR*
Ga0074054_1202883733300006579SoilSDRLRAVDRERARANIRAGMIAGSLALFVFALAFYISILYLR*
Ga0074057_1225073023300006605SoilMPSDRLRAVDRERARANIRAGMIAGSLALFVFALAFYISILYLR*
Ga0075421_10044756623300006845Populus RhizosphereMDRTRARANIRAGLLTGGVALLMFGLAFYASILYIG*
Ga0068865_10115500823300006881Miscanthus RhizosphereMDRERARATIRAGMIAGSLALLVFALAFYVSILYLR*
Ga0079219_1002868833300006954Agricultural SoilVDRERARATIRAGMIAGSLALLVFALAFYVSILYLR*
Ga0079219_1057132013300006954Agricultural SoilPDMDRDRARATIRAGLITASLALLVFALVFYISILYLR*
Ga0099792_1046571423300009143Vadose Zone SoilVDRERARAIIRAGMVTASLAVLVFALAFYVSILYLR*
Ga0114129_1059823843300009147Populus RhizosphereVDRDRARANIRTGMIYSGLALLVFALAFYVTILYIA*
Ga0126307_10000083223300009789Serpentine SoilVDRERARATIRAGMVAASLALVVFALAFYVAVLYLR*
Ga0126307_1000595753300009789Serpentine SoilMDRERARALIKSGMIASSLALLVFALAFYISIIYLR*
Ga0126307_1000876043300009789Serpentine SoilVDRERSRANIRAGMITACLALLVFALAFYVSILYLR*
Ga0126307_1005629623300009789Serpentine SoilMDRERSRSTIKAGMIAASLALLVFALAFYVSILYLR*
Ga0126307_1026185233300009789Serpentine SoilVDRERARASFRTGMWVGGLALFMFGLAFYATILYIP*
Ga0126305_1061831923300010036Serpentine SoilVDRERARATIRAGMITACLALLVFALAFYVSILYLR*
Ga0126315_1112614723300010038Serpentine SoilRYRLPAVDRERSRANIRAGMITACLALLVFALAFYVSILYLR*
Ga0126309_1003152853300010039Serpentine SoilMDRERARATIRAGMVAASLALLVFALAFYVSILYLR*
Ga0126312_1000661963300010041Serpentine SoilLDRVPPVDRERARATIKAGMIAASLALLVFALAFYVSVLYLR*
Ga0126306_1013032723300010166Serpentine SoilMDRERVRATIKAGMVASSLALLVFALAFYVSILYLR*
Ga0126306_1114857513300010166Serpentine SoilVDRERARATIRAGMLAASLALLVFALAFYVSILYLR*
Ga0126377_1324186123300010362Tropical Forest SoilMDRERSRALIKSGMIASSLALLVFALAFYVAVLYLR*
Ga0134124_1229915223300010397Terrestrial SoilSSDRVPPVDRERARATIRAGMVAGSLALLVFALAFYVAIIYLR*
Ga0120192_1008380123300012021TerrestrialVDRERARATIRAGMVAGCLALLVFALAFYVSIIYLR*
Ga0137364_1032336123300012198Vadose Zone SoilVDRERARATIRAGMVAGCLALLIFALAFYVAILYLR*
Ga0137382_1050975323300012200Vadose Zone SoilVDRERARATIRAGMVAGSLALLVFALAFYVAILYLR*
Ga0137374_1002786543300012204Vadose Zone SoilVDRERARANIRAGMVAGSLALLIFALAFYVSIIYLR*
Ga0137369_1068232023300012355Vadose Zone SoilVDRERARANIRAGMVASCLALLVFALAFYVAIVYLR*
Ga0150984_10466968513300012469Avena Fatua RhizosphereSIERYRLPAMDRERARANIRAGMLFSCLALLVFALAFYVSIVYLR*
Ga0150984_11928407123300012469Avena Fatua RhizosphereMDRERARSNIRAGMVTASLALLVFALAFYVAILYLR*
Ga0157283_1022515123300012907SoilVDRERARATIRAGMVAGSLALLVFAAAFYVSIIYLR*
Ga0157301_1027484613300012911SoilVDRERARATIRTGMFAGSLALLVFALAFYVSVLYLR*
Ga0137413_1046693823300012924Vadose Zone SoilVDRERARATIRAGMIAGSLALLVFGLTFYVSILYLR*
Ga0164301_1073097533300012960SoilVDRERARATIRAGMVAGSLALLVFALAFYVSIVYLR*
Ga0164305_1006324623300012989SoilVDRERARALIKSGMIASSLALLIFALAFYISVLYLR*
Ga0137412_1113176923300015242Vadose Zone SoilVDRERARANIRAGMIAGSLALLVFALAFYVSIVYLR*
Ga0132258_10023860113300015371Arabidopsis RhizosphereMDRERARATIRAGMVAASLALLVFGLAFYIAVLYLR*
Ga0132257_10099909313300015373Arabidopsis RhizosphereMDRERARATIRAGMVAASLALLVFGLAFYIAVLYLP*
Ga0190266_1020904233300017965SoilVDRERARATIKAGMVAASLALLVFALAFYVSILYLR
Ga0184624_1028001423300018073Groundwater SedimentVDRERARALIKSGMIASSLALLVFALAFYISVLYLR
Ga0190270_1038607723300018469SoilVDRERARATLRAGMVAGSLALLVFALAFYVSILYLR
Ga0193726_120072533300020021SoilVDRERNRALIKSGMVASSLALLVFALAFYVAVLYLR
Ga0179589_1018085223300024288Vadose Zone SoilVDRERARANIRAGMIAGSLALLVFALAFYVSIVHLR
Ga0179591_109044423300024347Vadose Zone SoilLYRVSPVDRDRARALIRSGLLAASLTVLVFGLAFYVSVLYLR
Ga0179591_122133233300024347Vadose Zone SoilVDRERARANIRAGMVTACLAVLVFGLAFYVSILYLR
Ga0210142_100166543300025552Natural And Restored WetlandsVDRERARATIRAGMVTASLALLVFALAFYVAIVYLR
Ga0207671_1011027323300025914Corn RhizosphereMDRERARATIRAGMIAGSLALLVFALAFYVSILYLR
Ga0207687_1034170933300025927Miscanthus RhizosphereMDRERSRATIRAGMVAGGLALLVFALAFYVSILYLR
Ga0209177_1046052213300027775Agricultural SoilRYRLPALMDRERARALIRSGMIASSLALLVFALAFYVAVLYLR
Ga0209382_1019864153300027909Populus RhizosphereMDRTRARANIRAGLLTGGVALLMFGLAFYASILYIG
Ga0247818_1119563323300028589SoilVDRQRARANIRAGLLAGALALLMFGLAFYGSILYLA
Ga0307295_1019771723300028708SoilVDRERARVSIRAGMLVGGFALFMFGLAFYVTILYLA
Ga0307316_1033450523300028755SoilVDRERARSNIRAGMVTACLALLVFALAFYVSILYLR
Ga0307306_1025010723300028782SoilMDRDRARSNIRAGMVTACLALLVFALAFYVSILYLR
Ga0307281_1016811323300028803SoilVDRERARALIKSGMIASSLALLVFALAFYVSVLYLR
Ga0307312_1120111133300028828SoilWPSTARYRLPAVDRERARATIRAGMVTASLALLVFALAFYVAILYLR
Ga0307277_1037255413300028881SoilAVDRMRARATIRAGMVAASLALLVFALAFFVSILYLR
Ga0307304_1044365523300028885SoilVDRERARANIRAGMLFSCLALLVFALAFYVSILYLR
Ga0299907_1024285923300030006SoilMDRERVRATIKAGMVASSLALLVFALAFYVSILYLR
Ga0299907_1074596833300030006SoilIARYRVRPMDRERVRATIKAGMVASSLALLVFALAFYVSILYLR
Ga0299906_1021302333300030606SoilMDRTRARANIRAGLIAGGLALLMFGLAFYASILYLA
Ga0299906_1033146313300030606SoilMDRTRARANIRAGLLAGSLALFMFGLAFYVSILYIG
Ga0307468_10002945023300031740Hardwood Forest SoilVDRERARALIKSGMIASSLALLVFALAFYIAVLYLR
Ga0308175_10303082323300031938SoilMDRERARSNIRAGMIAASLALLVFALAFYVSILYLR
Ga0268251_1033346923300032159AgaveVDRERARALIKSGMIASSLALLVFALAFYVSIIYLR
Ga0268251_1035815933300032159AgaveVDRERARATIKTGLVAASLALLVFALAFYVSILYLR
Ga0307470_1014030323300032174Hardwood Forest SoilMDRERARGLIKSGMVAGSLALFVFALAFYIAVLYLR
Ga0307470_1114843823300032174Hardwood Forest SoilVDRERARAVIKSGMIASSLALLVFALAFYIAVLYLR
Ga0307417_1009080933300033291Salt MarshMDRTRARANLRAGMLTAVLALFMFGLAFYISILYLA
Ga0326726_1055467723300033433Peat SoilVDRERARANIRAGMITACLALLVFGLAFYVSILYLR
Ga0247829_1090274723300033550SoilMDRERARATIRAGLLASTLALLVFALAFYVSILYLR
Ga0247829_1174151023300033550SoilVDRERARATIRAGLLASTLALLVFALAFYVSILYLR
Ga0364946_111855_84_1943300033815SedimentVDRTRARANIRAGLLAGGLALLMFGLAFYASILYLA
Ga0326723_0034900_652_7623300034090Peat SoilVDRERARANIRAGMVAGSLALLVFALAFYVAIVYLR
Ga0364932_0046921_415_5253300034177SedimentVDRTRARANIRAGLLAGGLALLMFGLAFYASILYLS

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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