NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119944_1000235

Scaffold Ga0119944_1000235


Overview

Basic Information
Taxon OID3300029930 Open in IMG/M
Scaffold IDGa0119944_1000235 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9850
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (60.87%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location NameChina: Pearl River Delta area
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F003582Metagenome / Metatranscriptome478Y
F012975Metagenome / Metatranscriptome275Y
F023851Metagenome / Metatranscriptome208Y
F073544Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0119944_100023511F023851N/AMCESCISNRYEPRWVIILAGRQSGSDSVKEFIIKRRYCGVEISASELLV
Ga0119944_100023512F073544N/AVYRVKRYYDIVNIVFLHAERLYGSTESLGLYASKIKYIKDGVEVEELFNNEDFTVMDEIVFEHVEEDNK
Ga0119944_100023513F000473AGGMTSNIYDDKHFKHGINLWTGEPNKPVFYSQEMRKRVREIQKPVPDLMMDVVKYPEFLALRLYEDNFIKYDGIKKEMVIAYVDRVKKLIESYGVRCELEGVPSEKIL
Ga0119944_100023515F012975GGAVLNLTLKGVEVFIQRYNKNNQESYWENYDLIIWKKDYAGYTNIKGTFRNNSWGISDRISVDTDGIWRLPKRYVRHFK
Ga0119944_100023518F003582N/AMNTYRVKLEIEAEVEAFDEGDALDYANDIFGVDDEIKNVKVISVKEK
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