NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134852_100799

Scaffold Ga0134852_100799


Overview

Basic Information
Taxon OID3300029824 Open in IMG/M
Scaffold IDGa0134852_100799 Open in IMG/M
Source Dataset NameLiquor fermentation pit mud microbial communities from Chengdu, China - Meta-7-1-30-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChongqing University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2279
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Fermentation Pit Mud → Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China

Source Dataset Sampling Location
Location NameChina: Chengdu
CoordinatesLat. (o)30.65Long. (o)104.06Alt. (m)Depth (m).01
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022442Metagenome / Metatranscriptome214Y
F033483Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0134852_1007997F033483GGAGGVTSGDTCVTINIDGLPVTLVLPERDVELMMWTYRANRILQEGRDDE
Ga0134852_1007998F022442AGGGGGMTFRPAGEARLDLYTDAMLLDIGPDTFVVPLARLADLTAHRRREVVVSRRYWGDAPGAFRDIEQGLRLQRSQTDRSLMLTERGRVYSIPVYLVLEVKDGIRESCTISMRVTDAQQLDDAHSRQTVLEVWA

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