NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029824

3300029824: Liquor fermentation pit mud microbial communities from Chengdu, China - Meta-7-1-30-B



Overview

Basic Information
IMG/M Taxon OID3300029824 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121315 | Gp0152036 | Ga0134852
Sample NameLiquor fermentation pit mud microbial communities from Chengdu, China - Meta-7-1-30-B
Sequencing StatusPermanent Draft
Sequencing CenterChongqing University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size14601299
Sequencing Scaffolds7
Novel Protein Genes10
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
Not Available4
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA1661

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameLiquor Fermentation Pit Mud Microbial Communities From Chongqing University, China
TypeEngineered
TaxonomyEngineered → Bioreactor → Unclassified → Unclassified → Unclassified → Fermentation Pit Mud → Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Sediment (non-saline)

Location Information
LocationChina: Chengdu
CoordinatesLat. (o)30.65Long. (o)104.06Alt. (m)N/ADepth (m).01
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003987Metagenome / Metatranscriptome458Y
F004383Metagenome / Metatranscriptome440Y
F010099Metagenome / Metatranscriptome308Y
F020859Metagenome / Metatranscriptome221Y
F022442Metagenome / Metatranscriptome214Y
F033483Metagenome / Metatranscriptome177Y
F045124Metagenome / Metatranscriptome153Y
F063807Metagenome / Metatranscriptome129N
F071368Metagenome / Metatranscriptome122N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134852_100046All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales25300Open in IMG/M
Ga0134852_100579Not Available3128Open in IMG/M
Ga0134852_100799Not Available2279Open in IMG/M
Ga0134852_101026Not Available1795Open in IMG/M
Ga0134852_101369Not Available1408Open in IMG/M
Ga0134852_101407All Organisms → cellular organisms → Bacteria1382Open in IMG/M
Ga0134852_102126All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166988Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134852_100046Ga0134852_10004627F020859MNKIIAKEVNPADVDFSAYFDDDGLKSVEGENCAVYIITADRRRNSGFNMEEYEYIEEQSQDIIDGFHDVNDKWANGYNSYDNYKEVLEYNNVLYSPQKCHLLKQWAEHADTSDTETIAEYLTITTGEEWAVKSFTGYSQGDYCEVVYCINHYTPEHINEIGKLWLGCGTEFAINNCYGYFVIDELRWEEGKKLRQYLADCYGCKPDELEIYLYDGEHTVTDYKIMK
Ga0134852_100579Ga0134852_1005792F010099MHNSRLPLSDAVLVITYIYPLPQFSHMTDAQSSFWTPARIGAVIGVVLLVVLLAYMVSLPQNKFVHADLLEPTYAGDADLGYWMVDKYDQEVDVYHLLVVVEHPNGTYEWLDGDGIWLPRRAVEGTFTVIGSFDRRKANL
Ga0134852_100799Ga0134852_1007997F033483VTSGDTCVTINIDGLPVTLVLPERDVELMMWTYRANRILQEGRDDE
Ga0134852_100799Ga0134852_1007998F022442MTFRPAGEARLDLYTDAMLLDIGPDTFVVPLARLADLTAHRRREVVVSRRYWGDAPGAFRDIEQGLRLQRSQTDRSLMLTERGRVYSIPVYLVLEVKDGIRESCTISMRVTDAQQLDDAHSRQTVLEVWA
Ga0134852_101026Ga0134852_1010261F010099MTYSQSSFWTPARIGAVIGAVLLIVALAYLVSLPQNQFQPADLLEPTYAADADLGYWMVDKYDQEVDVYHLLVVMEHPNGTYEWLDGDGIWL
Ga0134852_101369Ga0134852_1013691F045124MTDSDLQVVIYETRQDVRWIKDTLKEIKEANQAQDERINEIKARQDLQTGRDGAIAAAISAVVAFFTALASGGW
Ga0134852_101369Ga0134852_1013694F071368MDSLPHPVTTTDTYLARIVSQNDEIIALLNQQRPEPKQPRRLKEPKE
Ga0134852_101407Ga0134852_1014073F063807MKPLRTLSVSAALHSRLWLHKIRRRARTLDEVVEQALDALEEQEANDG
Ga0134852_102126Ga0134852_1021261F004383DNPLERAFMARIRADELRAELATLQKEFDEREDVVALKRRIDRCDHERQTCIEQAKIAGVSKVGNYLLKIRTRKTRTVVPKLFFAKHGAEAFVECCTVAIGKAEALLGKSALDDCCEVEVKEIGVTVEYERPENQGEVEDL
Ga0134852_102126Ga0134852_1021263F003987MIPALPCGTFADSETPAGAFYIAAFEKGDTPHHVGEYRIDVVIRALQALKACGYDDVEVGSIFAPDPENVHLLLIGLDGEARFGDA
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