NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311022_14528990

Scaffold Ga0311022_14528990


Overview

Basic Information
Taxon OID3300029799 Open in IMG/M
Scaffold IDGa0311022_14528990 Open in IMG/M
Source Dataset NameMetagenomes from anaerobic digester of solid waste, Toronto, Canda. Combined Assembly of Gp0238878, Gp0238879, Gp0242100, Gp0242119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Toronto
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1740
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Digestate → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location NameToronto, Ontario, canada
CoordinatesLat. (o)43.5479Long. (o)-79.6609Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071725Metagenome122N
F072892Metagenome121N
F076577Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0311022_145289902F072892AGGAGGMDINSLKNISTRLFGLYSQFKSVVSDLETNNTLDNREWAKGLLSNLSTELYYEANCLTDVLYPPRKEEKDETMFKIDGIIDAGRNPMSEDEFCELFLKWAEENKLQFGGGLGTYREEEENELLAEK
Ga0311022_145289903F076577AGGAGGMNFWPKSKVIALMEIAFHFGAISYAPSNGKKRREMWKEFKENCIDKRLKYINPDPRCTHPVNLDAIDYCWGYADKIDKGEEINMNELCEGCEFFKKEANNENPTQSN
Ga0311022_145289904F071725AGGAGGMKTLLNQTESEYLNLGSLDQELSWVLKIYSSGKINDLIYDGLLLFATDEEIKAIREKWQRKEINEVGLFHELEKLSKVESLPR
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