| Basic Information | |
|---|---|
| Taxon OID | 3300028778 Open in IMG/M |
| Scaffold ID | Ga0307288_10000001 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 856047 |
| Total Scaffold Genes | 836 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 561 (67.11%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Colorado | |||||||
| Coordinates | Lat. (o) | 38.9206 | Long. (o) | -106.9489 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015476 | Metagenome / Metatranscriptome | 254 | Y |
| F017067 | Metagenome / Metatranscriptome | 243 | Y |
| F050445 | Metagenome | 145 | Y |
| F070416 | Metagenome | 123 | Y |
| F090727 | Metagenome / Metatranscriptome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307288_10000001130 | F090727 | GGAG | LEAAILGGCATAGEWPAQIAAAIYDGVDYALSHPEIADTLARETSSVAPPLGRYESAIAKLTGFLRSRAPADQRLPVSTDEALVAGLVGLVGDHLRMGRLDRLRELRPDLVLLTLLPYVGFSEAQKWALKLEEA |
| Ga0307288_10000001134 | F015476 | N/A | MEVLRNLFGNVTAGIIRLLVTVGILAAVYFFVVRPVLDTTEKVSHEVNVNVQKGLKEANIAEINKTIEDVNRQVQREIKKSLRHAPSHSAADKLLRCVQRAHQDVHKIERCNEKY |
| Ga0307288_10000001353 | F050445 | GGA | VIPENVARARRLFWLGKTLLALGAILLPIIAYALVALVVQGHAKDEYFEAVSQILPVLLLALAIEQRYFTRRQSMPDLPPELEFSEADVRDLSRWYSRAAKVYALMVLAILGLGEWIAVEVLATGQSSEADLQNTAGSLAAGFTALIVSALVGTKRQVD |
| Ga0307288_10000001463 | F017067 | N/A | LPFWLARKAAPHLWKRVPWTKVWVASLWLANKGRERVEANLTEREQTEFWNLLKKSKGRPGNLSSRDRSRVKSIVGKAIRG |
| Ga0307288_10000001679 | F070416 | GGTGG | MIATIVEWKDLWQTVVASVVAGVGITFAFSLGIWGTGQFVELSRGDRQAAATIAGLVALLAFLLVAAAVIVGIVVMTHK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |