NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302144_10227740

Scaffold Ga0302144_10227740


Overview

Basic Information
Taxon OID3300028560 Open in IMG/M
Scaffold IDGa0302144_10227740 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)603
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034292Metagenome / Metatranscriptome175Y
F077542Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0302144_102277401F034292N/AGFDWTYSNRTGVRQLLDPSDFRQGQRSLSLTFEGPGINDAGIQQMIPVHGATTYDFSAYYKSAEFEGAGGPQIVLRDAYTGAPLFVSDVLTDADFWKEVHAKVTTSVSTTLLVLGIERFPAGSPIRGKLSLDDFELSPASADVSGDDSSPGSTANSKDNP
Ga0302144_102277402F077542AGGAVSSVLATQPESAPVAKVSQPRLTNNALLLSAGVILLLGPLA

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