Metagenome / Metatranscriptome Family F077542

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077542
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	55 residues
Representative Sequence	VSSALATQPEPAPVAKASQPRLTNNALLAGAGAILLLGPLAFGAVEPWSIFALE
Number of Associated Samples	109
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.15 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	83.76 %
Associated GOLD sequencing projects	103
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.436 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog (9.402 % of family members)
Environment Ontology (ENVO)	Unclassified (38.462 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.026 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.61% β-sheet: 0.00% Coil/Unstructured: 74.39%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF13614	AAA_31	6.84
PF13432	TPR_16	5.13
PF13807	GNVR	4.27
PF13428	TPR_14	1.71
PF01656	CbiA	0.85
PF13414	TPR_11	0.85
PF14559	TPR_19	0.85
PF02018	CBM_4_9	0.85
PF13371	TPR_9	0.85
PF01595	CNNM	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.44 %
Unclassified	root	N/A	2.56 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.44 %
Unclassified	root	N/A	2.56 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.44 %
Unclassified	root	N/A	2.56 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	95.73 %
Unclassified	root	N/A	2.56 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	76.92 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	18.80 %
Unclassified	root	N/A	2.56 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	76.92 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	18.80 %
Unclassified	root	N/A	2.56 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	76.92 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	18.80 %
Unclassified	root	N/A	2.56 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	76.92 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	11.97 %
Unclassified	root	N/A	2.56 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	76.92 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	11.97 %
Unclassified	root	N/A	2.56 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100509291	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1081	Open in IMG/M
3300002907\|JGI25613J43889_10185047	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300003368\|JGI26340J50214_10173283	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300004080\|Ga0062385_11121634	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300004092\|Ga0062389_101827417	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	787	Open in IMG/M
3300004478\|Ga0068972_1458754	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1020	Open in IMG/M
3300004605\|Ga0068952_1254726	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300004620\|Ga0068957_1382359	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653	Open in IMG/M
3300005468\|Ga0070707_101811415	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300005591\|Ga0070761_10307290	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	955	Open in IMG/M
3300005712\|Ga0070764_10365138	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	846	Open in IMG/M
3300005938\|Ga0066795_10178725	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	632	Open in IMG/M
3300005947\|Ga0066794_10001005	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6488	Open in IMG/M
3300005947\|Ga0066794_10196817	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300006028\|Ga0070717_11073017	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	733	Open in IMG/M
3300006102\|Ga0075015_100800010	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300006176\|Ga0070765_100291929	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1505	Open in IMG/M
3300009089\|Ga0099828_10009282	All Organisms → cellular organisms → Bacteria	7245	Open in IMG/M
3300009089\|Ga0099828_10094596	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	2574	Open in IMG/M
3300009520\|Ga0116214_1026400	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	2080	Open in IMG/M
3300009523\|Ga0116221_1247152	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	771	Open in IMG/M
3300009623\|Ga0116133_1210617	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300009628\|Ga0116125_1115788	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	725	Open in IMG/M
3300009630\|Ga0116114_1089804	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	826	Open in IMG/M
3300009635\|Ga0116117_1019395	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1714	Open in IMG/M
3300009637\|Ga0116118_1116991	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	883	Open in IMG/M
3300009641\|Ga0116120_1163217	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	715	Open in IMG/M
3300009646\|Ga0116132_1132115	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	762	Open in IMG/M
3300009698\|Ga0116216_10670649	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623	Open in IMG/M
3300009762\|Ga0116130_1232282	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586	Open in IMG/M
3300010341\|Ga0074045_10840545	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	580	Open in IMG/M
3300010379\|Ga0136449_101169729	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1215	Open in IMG/M
3300011087\|Ga0138570_1163031	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300012202\|Ga0137363_10692464	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	862	Open in IMG/M
3300012211\|Ga0137377_11892059	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300012683\|Ga0137398_10428443	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	903	Open in IMG/M
3300012918\|Ga0137396_10310731	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1166	Open in IMG/M
3300012927\|Ga0137416_10817656	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	825	Open in IMG/M
3300012930\|Ga0137407_12393903	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300014156\|Ga0181518_10279700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	837	Open in IMG/M
3300014159\|Ga0181530_10214189	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1052	Open in IMG/M
3300014162\|Ga0181538_10138805	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1402	Open in IMG/M
3300014199\|Ga0181535_10804769	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300014200\|Ga0181526_10211044	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1241	Open in IMG/M
3300014498\|Ga0182019_10437872	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	897	Open in IMG/M
3300014839\|Ga0182027_10941063	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	890	Open in IMG/M
3300015193\|Ga0167668_1009552	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	2189	Open in IMG/M
3300015193\|Ga0167668_1057976	Not Available	796	Open in IMG/M
3300017822\|Ga0187802_10109963	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1040	Open in IMG/M
3300017823\|Ga0187818_10560969	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300017933\|Ga0187801_10291963	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	662	Open in IMG/M
3300017946\|Ga0187879_10097029	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1691	Open in IMG/M
3300017948\|Ga0187847_10133581	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1358	Open in IMG/M
3300017959\|Ga0187779_10141716	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1476	Open in IMG/M
3300017975\|Ga0187782_10118209	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1958	Open in IMG/M
3300017996\|Ga0187891_1317332	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300018006\|Ga0187804_10563157	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300018008\|Ga0187888_1145352	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	974	Open in IMG/M
3300018012\|Ga0187810_10313091	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	651	Open in IMG/M
3300018012\|Ga0187810_10415116	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300018016\|Ga0187880_1264898	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	752	Open in IMG/M
3300018030\|Ga0187869_10539032	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300018034\|Ga0187863_10676090	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	582	Open in IMG/M
3300018040\|Ga0187862_10293106	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1030	Open in IMG/M
3300018042\|Ga0187871_10284664	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	915	Open in IMG/M
3300018058\|Ga0187766_11122708	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300018085\|Ga0187772_10585162	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	793	Open in IMG/M
3300018085\|Ga0187772_10873768	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300018085\|Ga0187772_11390810	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300018086\|Ga0187769_10415492	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1012	Open in IMG/M
3300018086\|Ga0187769_11083010	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300019082\|Ga0187852_1070272	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1588	Open in IMG/M
3300019888\|Ga0193751_1253482	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300021181\|Ga0210388_11589525	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300021405\|Ga0210387_11550719	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300021420\|Ga0210394_11492076	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300025406\|Ga0208035_1023038	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1002	Open in IMG/M
3300025432\|Ga0208821_1073444	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300025922\|Ga0207646_10881470	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	794	Open in IMG/M
3300025922\|Ga0207646_11478680	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	589	Open in IMG/M
3300026502\|Ga0255350_1007622	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	3376	Open in IMG/M
3300027439\|Ga0209332_1077725	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300027535\|Ga0209734_1039839	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	882	Open in IMG/M
3300027655\|Ga0209388_1184263	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	582	Open in IMG/M
3300027738\|Ga0208989_10008182	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	3559	Open in IMG/M
3300027803\|Ga0209910_10043233	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300027911\|Ga0209698_11416868	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300028090\|Ga0255349_1014119	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2021	Open in IMG/M
3300028560\|Ga0302144_10227740	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300028745\|Ga0302267_10244026	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	780	Open in IMG/M
3300028748\|Ga0302156_10042693	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	2500	Open in IMG/M
3300028859\|Ga0302265_1051114	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1423	Open in IMG/M
3300029883\|Ga0311327_10032350	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4296	Open in IMG/M
3300029907\|Ga0311329_10133560	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1991	Open in IMG/M
3300029915\|Ga0311358_11166987	Not Available	514	Open in IMG/M
3300029917\|Ga0311326_10083339	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1792	Open in IMG/M
3300029945\|Ga0311330_10283333	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1441	Open in IMG/M
3300029999\|Ga0311339_10202887	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2240	Open in IMG/M
3300030003\|Ga0302172_10252249	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300030007\|Ga0311338_10977309	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	824	Open in IMG/M
3300030053\|Ga0302177_10062224	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2231	Open in IMG/M
3300030057\|Ga0302176_10020101	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	2521	Open in IMG/M
3300030507\|Ga0302192_10046331	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2256	Open in IMG/M
3300030520\|Ga0311372_10497093	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1793	Open in IMG/M
3300030707\|Ga0310038_10050599	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2345	Open in IMG/M
3300030813\|Ga0265750_1065389	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300030906\|Ga0302314_10934557	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	847	Open in IMG/M
3300031028\|Ga0302180_10050154	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	2525	Open in IMG/M
3300031090\|Ga0265760_10227210	Not Available	638	Open in IMG/M
3300031261\|Ga0302140_10077121	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	3464	Open in IMG/M
3300031715\|Ga0307476_10170734	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1569	Open in IMG/M
3300031962\|Ga0307479_11814481	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300032180\|Ga0307471_103316064	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	570	Open in IMG/M
3300032805\|Ga0335078_10267326	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2321	Open in IMG/M
3300032828\|Ga0335080_10218228	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2093	Open in IMG/M
3300033405\|Ga0326727_11175780	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300033755\|Ga0371489_0163470	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1196	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.23%
Aquatic	Environmental → Aquatic	30.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.57%
Freshwater	Environmental → Aquatic → Freshwater	29.06%
Peat	Environmental → Terrestrial → Peat	19.66%
Sediment	Environmental → Aquatic → Sediment	1.71%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	29.06%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	25.64%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	19.66%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	14.53%
Loam	Environmental → Terrestrial → Soil → Loam	9.40%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.66%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	19.66%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	15.38%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.40%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	8.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.98%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.13%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.13%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.13%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.71%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.85%

Habitat	Taxonomy	Distribution
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	9.40%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	8.55%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	8.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.69%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.69%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.84%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.13%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	4.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.42%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.56%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.56%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	2.56%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.56%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.71%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.71%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	1.71%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.71%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.71%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.85%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.85%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.85%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004478	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 69 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004605	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 40 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004620	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 49 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental	Open in IMG/M
3300005947	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009630	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009637	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40	Environmental	Open in IMG/M
3300009641	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150	Environmental	Open in IMG/M
3300009646	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009762	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011087	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 55 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015193	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300025406	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10 (SPAdes)	Environmental	Open in IMG/M
3300025432	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40 (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026502	Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r1	Environmental	Open in IMG/M
3300027439	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027535	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027803	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712S3S	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028090	Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25.v15	Environmental	Open in IMG/M
3300028560	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2	Environmental	Open in IMG/M
3300028745	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_3	Environmental	Open in IMG/M
3300028748	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2	Environmental	Open in IMG/M
3300028859	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_1	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029907	I_Bog_N1 coassembly	Environmental	Open in IMG/M
3300029915	III_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029917	I_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029945	I_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030003	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_3	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030507	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_2	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300030813	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033755	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1005092912	3300002245	Forest Soil	VSSVLATQPEPASVAKSSQPRLTNNALLTAAGAVLLLGPLAFGAVEPWSIFALEASAMLLLAVWVYRQWINRELNVSD
JGI25613J43889_101850472	3300002907	Grasslands Soil	VSSALATQPEPAPVAGSSQPRLTDNTLLASAGAVLLLAPLAFGAVEPWSVFALETCSMLLLAVWASRQ
JGI26340J50214_101732831	3300003368	Bog Forest Soil	VSSVLATQPEPAPVVKASKARLSNNVLLISATAVLLLGPLAFGAVEPWSIFALEACAT
Ga0062385_111216342	3300004080	Bog Forest Soil	VSSALATQPEPAPVVKVSQPRMTNVALLMSGCAVLLLAPLAFGAVQPWSIFALETGALLL
Ga0062389_1018274171	3300004092	Bog Forest Soil	MSTALATPPQPAPVTKVSQPRITNLALLGAAWAVLLAAPLAFGA
Ga0068972_14587542	3300004478	Peatlands Soil	VSSALATQPEPAPVANPSHPRLTNNALLMGATAVLLLGPLAFGAVEPWSIFALE
Ga0068952_12547261	3300004605	Peatlands Soil	VSSALATQPEPASIAKASRPRLTSTALLAGACAVLLLGPLAFGAVEPWS
Ga0068957_13823592	3300004620	Peatlands Soil	VSSALATQPEPAPAAPASQPRLTNNALLMGATAVLLLGPLAFGAVEPWSIFALEACA
Ga0070707_1018114152	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VSSVLATQPEPAPIAKSSRPRLTNNTLLAGATAVLLLGPLAFGAVEPW
Ga0070761_103072901	3300005591	Soil	VSSALATQPEPAPVAKVSQPRLTNTALLSSACVVLLLGPLVFGAVEPWSIF
Ga0070764_103651382	3300005712	Soil	VSSAAAAVQSEPAPVVKHARPKFTHSALLGGAGAVLLLAPLAFGAVEPWSI
Ga0066795_101787251	3300005938	Soil	VSSALAAPPEPVPAAKVSRPRLTNTALLMGSSAVLLLGPLAFGAVEPWSIFALEACAMLL
Ga0066794_100010056	3300005947	Soil	VSSALATQPEPAPVAKASQLRLTNTALLAGGCAVLLLGP
Ga0066794_101968172	3300005947	Soil	VSSALAAPPEPVPAAKVSRPRLTNTALLMGSSAVLLLGPLAFGAVEPWS
Ga0070717_110730171	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VSSALATQPEPAPVAKASKPRVTNTAMLTGACVILLFGPLAFGGVEPWAVFALEASSLLLLGIWAY
Ga0075015_1008000102	3300006102	Watersheds	VSSALATQPEPTPVAKVSRPRLTHTALLAGACAVLLLGPLVFGAVEPWSIFALEACAMLLVVVWAYRQWINHELNVS
Ga0070765_1002919292	3300006176	Soil	VSSAAAAVQSEPAPVVKHARPKFTHSALLGGAGAVLLLAPLAFGAVEPWSIFALEASAILLL
Ga0099828_100092827	3300009089	Vadose Zone Soil	VSSALATQPEPAPVTKVSRPRLTNTALLAGVCAVLLLGPLAFGAVEPW
Ga0099828_100945961	3300009089	Vadose Zone Soil	VSSALATQPEPAPVAKSSQPRLTNNALLAGAGAILLLGPLAFGAVEPWSIFA
Ga0116214_10264001	3300009520	Peatlands Soil	VSSALATQPEPAPVAKKSASRITNNALLTRACAVLLLGPLA
Ga0116221_12471521	3300009523	Peatlands Soil	VSSALATQPEPAPVAKKSASRITNNALLTGACAVLLLGPLAFRAVEPWSIFALE
Ga0116133_12106171	3300009623	Peatland	VSSALATQPEPAPVVKVSQPRLTNSGLLTGAWAVLLLGPLAFGAVEPWSIFALEACAVLLLA
Ga0116125_11157881	3300009628	Peatland	VSSALAVQPEPAPVSKPSRPKLSNSALLAGTGALLLLAPLAFGAVEPWSIFALEAC
Ga0116114_10898042	3300009630	Peatland	VSSALATQPEPALVAKAKALQPRLTNNALLMGACAVLLLGPLAFG
Ga0116117_10193951	3300009635	Peatland	VSSALAVQPEPAPVPKASRPKLSNSALLAGTGALLLLAPLAFGAVEPWSIFALEACAVLLLC
Ga0116118_11169912	3300009637	Peatland	VSSALATQPEPAPVAKVSQARLTNNTLLFGACVVLLLGPLAFGAVEPWSIFGLEGCAV
Ga0116120_11632172	3300009641	Peatland	LSSALAVHPEPAPVPKAPTPKLTNTALLAGTGGVLLLAPL
Ga0116132_11321151	3300009646	Peatland	VSSALATQPEPAPVAKVSQARLTNNTLLFGACVVLLLGPLAFGAVEPWSI
Ga0116216_106706492	3300009698	Peatlands Soil	VSSALATQPEPAPVAKVSQPRLTNNALLMGTSAVLLLGPL
Ga0116130_12322821	3300009762	Peatland	VSSALAPPHPEPAPVAKLAEPRLTNNALFAGTCGALLFGPLAFGAVEPWSVFVLETCSLL
Ga0074045_108405452	3300010341	Bog Forest Soil	VSSALATQPEPAPVAKGSHPRITNNALLANACAVLLLGPLAFGAVEPWSIFALEACAMLL
Ga0136449_1011697292	3300010379	Peatlands Soil	VSSALATQPEPAPVAKVSQPRLTNNALLMGASAVLLLGPLAFGAVEPWSIFALEACAMLLLAAWASRQWINRELNV
Ga0138570_11630311	3300011087	Peatlands Soil	VSSALATQPEPAPVARVSQPRLTNNALLMGASAVLLLGPLAFGAV
Ga0137363_106924641	3300012202	Vadose Zone Soil	VSSALATQPEPAPVAKSSQPRLTNNALLAGAGAILLLGPLAFGAVEPWSIFALEASAM
Ga0137377_118920592	3300012211	Vadose Zone Soil	VSSALATQPEPAPVAKGSQPRLTNNALLAGAGAILLLGPLAFGAVEPWSIFAL
Ga0137398_104284431	3300012683	Vadose Zone Soil	VSSALATQPEPAPVAKGSQPRLTTNALLAGAGAILLLGPLAFGAVEPWSIFA
Ga0137396_103107311	3300012918	Vadose Zone Soil	VSSALATQPEPAPVAKGSQPRLTNNALLAGAGAILLLGPLAFGAVE
Ga0137416_108176561	3300012927	Vadose Zone Soil	VSSALATQPEPAPAARSSQPRLTNNALLAGATAVLLLGPLAFGAVEPWSIFALEASAILLLA
Ga0137407_123939032	3300012930	Vadose Zone Soil	MSSALATQPEPAPVSKVSQPRITNTALLAGACAILLLA
Ga0181518_102797001	3300014156	Bog	VSSARATQPEPAPVAKAARPRLTNTALLMGASGVLLLGPLAF
Ga0181530_102141892	3300014159	Bog	VSSALATPPEPAPVAKASQPRLTNTALLVGTSAVLLLGPLAFGAVEPWSIFALEACAMLLLA
Ga0181538_101388052	3300014162	Bog	VSSARATQPEPAPVAKVSQLRVTNTALLVGAFTVLL
Ga0181535_108047692	3300014199	Bog	VSSALATQPEPAPVAKASQPRLTNNTLLMGACAVLLLGPLAFGAVEPW
Ga0181526_102110441	3300014200	Bog	LSSALAVHPEPAPVPKAPTPKLTNTALLAGTGGVLLLAPLAFGAVEPWAIFALEACAVLLLLAWGVRQWL
Ga0182019_104378721	3300014498	Fen	VSSALATQSDPAPVAKASRPRLTNTALLMGASAVLLLGP
Ga0182027_109410632	3300014839	Fen	VSSALATQSDPAPVAKASRPRLTNTALLMGASAVLLLGPLAFGAVEPWSIFALEACAMLLLALWAYRQWMKRVL
Ga0167668_10095523	3300015193	Glacier Forefield Soil	VSSALATQPEPAPVARGSQRRLTNNTLLAGAGAVLLLAPLAFGAVEPWSIFALEACAMLLLTVWASRQW
Ga0167668_10579762	3300015193	Glacier Forefield Soil	VSSVLATQPEPASVAKSSQPRLTNNALLTAAGAVLLLAPLAFGAVEPWSIFA
Ga0187802_101099632	3300017822	Freshwater Sediment	LSSALAAQPEPAAPVVKASRLRLTNSILLASAGSVLLLAPLAFGAVEPWSIFALEACSAMVLLAWGLRQWLNRQLEFT
Ga0187818_105609691	3300017823	Freshwater Sediment	VSSAVAFQPEGPRAAKATRPALSNSMLLAGAGAILLSAPLAFGAVEPWAIFAL
Ga0187801_102919631	3300017933	Freshwater Sediment	LSSALAVQPEPAPVSKASRPKLTNSELLASTGGVLLLAPLAFGAVEPWSIFALE
Ga0187879_100970291	3300017946	Peatland	VSSALATQPEPAPVAKASKPRLTNNALLMGANAVLLLGPLAFGAVEPWSIFALEACAMLLLALWA
Ga0187847_101335812	3300017948	Peatland	VSSALATQPEPAPVAKVSQPMLTNNALLAGAWAVLLLGPLAFGAV
Ga0187779_101417161	3300017959	Tropical Peatland	LSSALAAQPQPAPVVKATRPWLNNSMLLGGTGAVLLLAPLVFGAVEPWSIFALEAFSALL
Ga0187782_101182091	3300017975	Tropical Peatland	LSSALAAQPEPAPVVKASRPTLTNSVLLAGTGTILLLAPLAFGAAEPWAIFTLEACSVLALLAWG
Ga0187891_13173322	3300017996	Peatland	VSSALATPPEPAPVAKASQPRLTNTALLMGTSAVLLLGPLAFGAVEPWSIFALEACAML
Ga0187804_105631572	3300018006	Freshwater Sediment	VSSALATQPEPAPVAKVSQRRLTNNALLASACIVLLLGPLAFGAV
Ga0187888_11453521	3300018008	Peatland	VSSALATQPEPAPVAKVSQARLTNNTLLFGACVVLLLGPLAFGAVEPWSIFGLEACAVLLLAAWAYRQWINRELNL
Ga0187810_103130911	3300018012	Freshwater Sediment	VSSALAAQPEPAPVSKASRPKLTNSTLLASTGGVLLLAPLVFGAVEPWSIF
Ga0187810_104151162	3300018012	Freshwater Sediment	VSSALATQPEPAPVAKVSQRRLTNNALLASACIVLLLGPLAFGAVEPWSIFALETCTMLLLAAWACRQWI
Ga0187880_12648981	3300018016	Peatland	VSSALATQPEPAPVENAKVPRPRPTNNVLLAGACGVLLLGPLAFGAVEPWSIFALEACAVLLLAA
Ga0187869_105390321	3300018030	Peatland	VSSALATPPEPAPVAKASQPRLTNTALLMGTSAVLLLGPLAFGAVEPW
Ga0187863_106760902	3300018034	Peatland	LSSALATQPESAPLPKVSQPQLTNNMLLLGGCAVLLLGPLAFGAV
Ga0187862_102931062	3300018040	Peatland	VSSALATQPEPAPVAKKSAPRITNNALLAGTCAVLLRGPLDFGAVEPWSIFALEACAMLLLGVWATRQWLNRELNLF
Ga0187871_102846641	3300018042	Peatland	VSSALAPPPEPAPIAKVSQRRLTNNALFVGTCGVLLFGPLA
Ga0187766_111227081	3300018058	Tropical Peatland	LSSALAAQPQPAPVVKATRPWLNNSMLLGGTGTVLLLAPLAFGAVEPWSIFALEACSALLLVAW
Ga0187772_105851621	3300018085	Tropical Peatland	VSSALATQPEPAPVARALRPRLTNNALLMGAAAVLLLGPLAFGAVEPWSIFALEDSAVLLLAAWAYRQ
Ga0187772_108737681	3300018085	Tropical Peatland	VSSALATQPEPAPVVRASKPRLTNSVLLAASGSLL
Ga0187772_113908102	3300018085	Tropical Peatland	LSSALAAPPESAPEPKSSRVPRLSSSVLLAGTGVVLLAGPLAFGAVEPWSIFALEACAML
Ga0187769_104154922	3300018086	Tropical Peatland	LSSALATQPEPAPVVRVSRPWLTNSLLLASAGGVLVLAPLAFGAVEPWSVFALEACSAIVLLAWGLHL
Ga0187769_110830102	3300018086	Tropical Peatland	LSTAPVVRSESAAVVKASRPKLTNSVLLASTGAGLLLAPLAFGAVEPWSTFAL
Ga0187852_10702722	3300019082	Peatland	VSSALATQPEPAPVAKVSQARLTNNTLLFGACVVLLLGPLAFGAVEPWSIFGLEGCAVLLLAAWAYRQWINR
Ga0193751_12534821	3300019888	Soil	VSSALATQPEPAPVAKGSQPRLTNNALLAGAGAVLLLGPLVF
Ga0210388_115895252	3300021181	Soil	VSSALATQPEPKTVARAKRPLLTNNILLVSASVVLLLGPLAFGAVEPWAIFALQACAMLVFAAWGFRQWSNRELIIVD
Ga0210387_115507191	3300021405	Soil	MSTALASPPQPAPITKVSQPRITNLAVLGAAWAILLAAPLAFGAVEPWSIFALETSSLLLLGLWA
Ga0210394_114920762	3300021420	Soil	VSSALAAQPEPAPVAKVSQPRLTNNVLLTGVCGVLLLAPLAFGAVEPWSIFALEACAMLLLAL
Ga0208035_10230381	3300025406	Peatland	VSSALATQPEPAPVTKVSQPRLTNKALFAGAGAIL
Ga0208821_10734441	3300025432	Peatland	VSSAVATQPEPAPVAKASQPRLTNNALLMGATAVLLLGPLAFGAVEPWSIFALEACAML
Ga0207646_108814702	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VSSALATQPEPAPVAKASQPRLTNNALLAGAGAILLLGPLAFGAVEPWSIFALE
Ga0207646_114786802	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VSSVLATQPEPAPIAKSSRPRLTNNTLLAGATAVLLLGPLAFGAVEPWSIFA
Ga0255350_10076221	3300026502	Soil	VSSALATQPEPAPVTKVSQPRLTNKALFAGAGAILLLGPLAFGAVEPWSIFALETCAMLLLALWAAR
Ga0209332_10777251	3300027439	Forest Soil	VSSALATQPQPAPVARPSQPKLTNTAMLVGACIILLFGPLAFGGVEPWA
Ga0209734_10398392	3300027535	Forest Soil	VSSALATQPESAPVARSSQPRLTNNALLSGAGAILLVGPLAFGAVEPWSIFALEASAMLLLAVWASR
Ga0209388_11842631	3300027655	Vadose Zone Soil	VSSALATQPEPAPVAKGSQPRLTNNALLAGAGAILLLGPLAFGAVEPWSIFALEASAM
Ga0208989_100081821	3300027738	Forest Soil	VSSALATQPEPAPVAKRSQPRLTNNTLLAGAGAILLVGPLAFGA
Ga0209910_100432331	3300027803	Thawing Permafrost	VSSALATQPEPAPVTKVSQPRLTNKALFAGAGATLLLGPLAFGAVEPWSIFA
Ga0209698_114168681	3300027911	Watersheds	VSSALATQPEPAPVAKVSQPRLTNTRLLMGACGVLLLAPLAFGAVEPWSIFALEAGALLVFCVWAVRQ
Ga0255349_10141191	3300028090	Soil	VSSALATQPEPAPVTKVSQPRLTNKTLFAGAGAILLLGPLAFGAVEP
Ga0302144_102277402	3300028560	Bog	VSSVLATQPESAPVAKVSQPRLTNNALLLSAGVILLLGPLA
Ga0302267_102440262	3300028745	Bog	VSSVLATQPESAPVAKVSQPRLTNNALLLSAGVILLLGPLAFGAVEPWSIFALEACATLLLVAWA
Ga0302156_100426933	3300028748	Bog	VSSVLATQPESAPVAKVSQPRLTNNALLLSAGVILLLGPLAFGAVEPWSIFALEA
Ga0302265_10511142	3300028859	Bog	VSSVLATQPESAPVAKVSQPRLTNNALLLSAGVILLLGPLAFGAVEPWSIFALEAC
Ga0311327_100323504	3300029883	Bog	VSSVLATQPESAPVAKVSQPRLTNNALLLSAGVILLLGPLAFGAVEPWS
Ga0311329_101335601	3300029907	Bog	VSSVLATQPESAPVAKVSQPRLTNNALLLSAGVILLLGPLAFGAVEPWSIFA
Ga0311358_111669871	3300029915	Bog	LSSALATQPNSASLAKVAQPRLTNNMLLLGGCAVLLLGPVAFGTVEPWSIFALETCAMLLVVAWAARQWFN
Ga0311326_100833391	3300029917	Bog	VSSALATQPEPAPVTKVSQPRLTNKTLFAGAGAILLLGPLAFGAVEPWSIFALETCAMLLLALWAAR
Ga0311330_102833332	3300029945	Bog	LSSALATQPNSASLAKVAQPRLTNNMLLLGGCAVLLLGPVAFGTVEPWSIF
Ga0311339_102028871	3300029999	Palsa	VSSALATQPEPAPVAKASQPLLTNNTLLAGACAILLLGPLAFGAVQPWSTFALEACAVLL
Ga0302172_102522491	3300030003	Fen	LSTALALPPDPAPVAKVPKPKLTNSALLAGAGGILLIAPLAFGAVEPWSIFALETSSV
Ga0311338_109773092	3300030007	Palsa	VSSALAPLPEPAPVARVSEPRLTNNALFAGTCGVLLFGPLAF
Ga0302177_100622243	3300030053	Palsa	VSSALATQPEPAPVAKVSQPRVTNTVLLCAACTVLLLAPLAFGAVEPWSIF
Ga0302176_100201011	3300030057	Palsa	VSSALATHPEPTPPVPKVSHPRLTNDVLLAGACSVLLLGPLAFGAVEPWSIFGLETCAMALL
Ga0302192_100463311	3300030507	Bog	VSSVLATQPESAPVAKVSQPRLTNNALLLSAGVILLLGPLAFGAVEPWSIFALE
Ga0311372_104970933	3300030520	Palsa	VSSALATQPEPAPVAKASQPLLTNNTLLAGACAILLLGPLAFGA
Ga0310038_100505993	3300030707	Peatlands Soil	VSSALATQPEPAPVANPSHLRLTNNALLMGTAAVLLLGPLAFGAVEPWSIFALEACAVLLLA
Ga0265750_10653891	3300030813	Soil	VSSALAAQPEPAPIAKVSSPRLSNNALLMGATAVLLLGPLAFGAVEPWSIFALETCAM
Ga0302314_109345571	3300030906	Palsa	VSSALATQPEPAPVAKASQPLLTNNTLLAGACAILLLGPLAFGAV
Ga0302180_100501543	3300031028	Palsa	VSSALVTPPEPAPVAKVSQPRLTNTALLAGATTVLLLGPLAFGAVEPWSIFALEVCAV
Ga0265760_102272101	3300031090	Soil	VSSALAPTHPEPAPIAKLAEPRLTNNALFAGTCGALLFGPLA
Ga0302140_100771213	3300031261	Bog	VSSVLATQPESAPVAKVSQPRLTNNALLLSAGVILLLGPLAFGAVE
Ga0307476_101707341	3300031715	Hardwood Forest Soil	LSSALATQPEPAPAVKVSQPRLTNATLFVGACAVLLFGPLAFGAVEPWSIFTLE
Ga0307479_118144811	3300031962	Hardwood Forest Soil	VSSALATQPEPAPITKVSQPRLSDNALLAGAAAVLLLAPLAFGAVEPWSIFALQAC
Ga0307471_1033160642	3300032180	Hardwood Forest Soil	VSSALATQPEPAPVAKRSKPRLTNNVLLAAATAVLLLGPLAFGAVEPWSIFALETS
Ga0335078_102673261	3300032805	Soil	LSSALAAPPESAPEPKSQRVPRLSNSVLLAGTGFVLLAAPLAFGAVEPWSIFALEVCAMLLMMAWATRQWLQQQ
Ga0335080_102182283	3300032828	Soil	VSSALATQPEPAPVVKVSQPRLTDTALLLSAYGVLLLAPLAFGAVEPWSIFALETCALLLLCAWTARQW
Ga0326727_111757801	3300033405	Peat Soil	VSSALAVQPEPAPVAKASQPRLTSTALLTGACAVLLLGPLAFGAVEPWSIFALEVC
Ga0371489_0163470_3_143	3300033755	Peat Soil	MSSALATPPDPAPVAKASRPRLTSTALLMGASAVLLLGPLAFGAVEP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077542

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences