NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1003005

Scaffold Ga0247723_1003005


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1003005 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8612
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009328Metagenome / Metatranscriptome319Y
F039525Metagenome163Y
F042295Metagenome158Y
F085338Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100300511F085338AGGAMTKHEAQKILDEIRSGFGDAYTEACAIECLYLTGDLGTHETVRSARVDETVREEGYRARLRERAIMVARSKE
Ga0247723_100300518F039525GAGMSDYIKGFNAGVDCVLTEIERLEKIAPINLEQLLKHLDPQRDQKTAQKPEKTPS
Ga0247723_100300524F009328AGGAGMSDGYYCVVCGRFLLANEHGVIVHDDILHPQEMDF
Ga0247723_10030057F042295N/AMKYEEKEQGHECFANGCPMAGGISTGGNWVCAYHNQATSDQWPRVTEALRDAEAVRVAINEVMKIDMISWGASVNGYPPKWQEFAALFDDQPELQPTVHEQIRKTKYEYRLRNELAIRAGLAKRKS
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