| Basic Information | |
|---|---|
| Taxon OID | 3300027963 Open in IMG/M |
| Scaffold ID | Ga0209400_1000145 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 62162 |
| Total Scaffold Genes | 124 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 67 (54.03%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007163 | Metagenome / Metatranscriptome | 356 | Y |
| F009605 | Metagenome / Metatranscriptome | 315 | Y |
| F011754 | Metagenome / Metatranscriptome | 287 | Y |
| F012023 | Metagenome / Metatranscriptome | 284 | Y |
| F012868 | Metagenome / Metatranscriptome | 276 | Y |
| F014503 | Metagenome / Metatranscriptome | 262 | Y |
| F019433 | Metagenome | 229 | Y |
| F035192 | Metagenome / Metatranscriptome | 172 | Y |
| F042301 | Metagenome / Metatranscriptome | 158 | Y |
| F064668 | Metagenome / Metatranscriptome | 128 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209400_100014512 | F035192 | AGGAG | MSKQEDTLHKAYGNMPKEVGYSGNWDFIPTWRGVKYYWYKLIRKVTR |
| Ga0209400_1000145121 | F009605 | AGGAG | MKKVLNAIWLFLVAFGEARYAASLARQGRVAEAKAVYGA |
| Ga0209400_100014533 | F012023 | AGG | MKQIDYTKLNERVVEQAYEAVLTKEQLQKLIQDKFDRATRYHQALAKAPTFSVN |
| Ga0209400_100014538 | F042301 | AGGAG | MVKEGSKWTGGDDKFHVIHVIELEGHTWVHYIKENVQDHELNREYSCYLESFLQRFRPIS |
| Ga0209400_100014539 | F011754 | N/A | MKIGFSLGRCVRDIVKGNVSINDVAFIIAATSIHDEPQLANVIEQYMYRDDDYLYGLDEAACQSVALDLWKTNKILQPRRQGLHRHRQPENAVWVDMFPTVISDNHSVKTAWDAYRLMIHMVENVDTDALETFK |
| Ga0209400_100014541 | F014503 | N/A | MKTIVNYWRFDDGTKPINPGNRFGEICVPRGWYCWVYPEDDTEFEEWMSRMCPTADVTHRFNSGDPMWTVYIHDDTEVTLFQLRWL |
| Ga0209400_100014545 | F019433 | N/A | MATAKTKIGTIHEILSTRARATFPYRVNFSEIKLAQVEEMAVWCITNCRGLWREEHYHALYFQFEDDYDAMMFMLKFGSSEGTKLK |
| Ga0209400_100014552 | F064668 | N/A | MKITVYSRNRLYETFSKWDVPRDFADPMANYLVYGYEPGSCFTSLLANDFFAAMQHSHPANTVEAFKCLVGWINDCMPPDAYSSYNRVSEWIHLDEDSRRAILEKYQLIFTEQEEVMLALRDESTIEPILY |
| Ga0209400_100014553 | F007163 | GGAG | MTIEDLEYIFEYQVEEGTTKLYFMLVDQGKMPIIERHPSNNLAGLLPMLSSFEYAGSDAGMPRFVK |
| Ga0209400_100014559 | F012868 | AGGAG | MRHYDYDWDLEPWGITFDPELNIDKLGWKSGDYFKITNVNGRAMLVKCDPLVKFIKEGENAIEQMG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |