| Basic Information | |
|---|---|
| Taxon OID | 3300027842 Open in IMG/M |
| Scaffold ID | Ga0209580_10000010 Open in IMG/M |
| Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 515850 |
| Total Scaffold Genes | 491 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 334 (68.02%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Pennsylvania, Centralia | |||||||
| Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000036 | Metagenome / Metatranscriptome | 4352 | Y |
| F000092 | Metagenome / Metatranscriptome | 2385 | Y |
| F002522 | Metagenome / Metatranscriptome | 552 | Y |
| F003242 | Metagenome / Metatranscriptome | 498 | Y |
| F004066 | Metagenome / Metatranscriptome | 455 | Y |
| F009740 | Metagenome / Metatranscriptome | 313 | Y |
| F053605 | Metagenome / Metatranscriptome | 141 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209580_1000001010 | F000092 | GAG | VKQHLQRQSGVANVDVSLIDGKVEVTPKEDGKIDPPQLLKATYDSGVSVAELDMTATGKLVKDSSGNLVLQVSPNQSFVLAPNELSKGLEPLMDSPSVITVRGQLYKKPPGKQKKTDVPATLKLLVLEVEKKE |
| Ga0209580_10000010103 | F053605 | GGA | LVVAAGSDGKVGQNVGSILIAFVITFTVTGSLVLGIALAYTSVLGLLHAFAYNTRKPRPALVLVPTQTQAGAD |
| Ga0209580_100000102 | F004066 | GAG | MDAALKAKLDEARNRMNSQQAGINADRKHDDPAMREWARGKQRPANAERAQFRNSLTVEDQNQIEERIQQLLDENPALSAATLDSKIEPPSVSFEVLAEYYFLRDILGG |
| Ga0209580_10000010245 | F003242 | N/A | MWIEKLFSGVLRVWTPLGPRYLKPSFSQRLYLLWVFRNFQTLPVKVLTSRQLRFVENLWAQDRFLSLGVGVDDVPLLGTLEQRPPVSQIKIPRRPPHTVNDTVATFAADVNHQ |
| Ga0209580_10000010280 | F009740 | AGG | MSKTSIRKPRWLFIPIRVLLVTFVVTLLSFAVSLFLGILGVLLAAKLRGTPHPNLAMAYRHIAFPAAAVVAGIVVISAAAMEIRHYRQLKTLRQLEDQMERAR |
| Ga0209580_10000010320 | F002522 | GGA | MKFSRLQILIAAGAGFLVLLGFFIYLMWLNGQPPVLAKSPEIDPLTKIPLSISLNPLRDRSSERAASEFLRAMRDGHCKEELSDWAKDYRSRRAAFICDSEAKHPLLAWKIVDWEERPPLRLLYYKAKRRNEPGTDEILSVTLDDRSGDWVVTKYDSLY |
| Ga0209580_1000001054 | F000036 | GAG | MACDSTEQLRAEYGPFHTRGEAEREANKLGFGYLLRYEHLIGEDENIKEVRCIFIELESEPGARYLAPKLHTRCASCGESAIHDYGWQAEVWADIHEFEHSRHRVRLFEQTRKAGLKEIAGWRDACA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |