NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10036990

Scaffold Ga0209972_10036990


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10036990 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2768
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001229Metagenome / Metatranscriptome741Y
F025979Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_100369901F000258GGAGMTVDYTLDAMLELRKFIWSDLVTLNIFDEDDYLTANGDNYNPIIPVQQSEVLNQLLSGKKHIVYDKIGMSYEDNWLICCEQVLFTIYSTNVSEINQFRNYMVDRFRRLDASAKDVNAYANLSNKFKFHSIFIADISPTSP
Ga0209972_100369903F001229N/AMYSIVDSILSMKLDIYIQRDIQDPNTGAIIKEWIYSKTLDCHAKGIISNSVTSRNGDRQVFDNRYINDQLIQVRTSEKLTLRQKITNVRDSEGTVIWTELDNPTDTPTVFEVVGVTPITDPFGRVIAFNSTMKRSENQRIGI
Ga0209972_100369905F025979N/AFRYDILGHTFTKEHPFVAMDKSQAQAIFDKEEGFRLATPNEVQEFYN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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