NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209810_1000063

Scaffold Ga0209810_1000063


Overview

Basic Information
Taxon OID3300027773 Open in IMG/M
Scaffold IDGa0209810_1000063 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)325079
Total Scaffold Genes341 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)248 (72.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003246Metagenome / Metatranscriptome498Y
F004652Metagenome / Metatranscriptome429Y
F004844Metagenome / Metatranscriptome421Y
F022478Metagenome / Metatranscriptome214Y
F026338Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0209810_1000063108F022478GGAVLVYAEALDVAAEGAVWYARRVGGGSFDALHVAGKNTDTGIHARWFDFTGGEPRLDVRPYGTDPQAAVLAEVARLRTDADVVVTVVLPEQFRRRSLVAAAQRAQFRLKLRLLVEPGVVVADVPAVTSHRRPEGRVPQRLVVRVLAGQLNEATRRAVEYAQGLGADDLRAVHFGPRRWDGDVGIPVDDAPLEGRLGDSILAYARELTADAESAVNVVLPERLRPNLPRLRGRRALAIKRCLLFEPHVILSSIPYQE
Ga0209810_100006315F004844GAGMTRARERTTVFLFALLLLVLYVGLAFAAGYGLGRILL
Ga0209810_100006347F004652AGGAVAETIEIDVPRRGIGSDLTEALAAHGLHAEVVDEGERCALQVRFASGERERLVEGAIHAIEQFLSERMLPLVVQRADGGAVVRPPGD
Ga0209810_100006351F003246AGGVSSSARDPLRPAEAVAGLLAASGLFLGLLELFYRPFRLAPAAVILLLVATVMSKDQQRLIRIAFAIVGVCFVAGAALQVITHHPLF
Ga0209810_100006369F026338GGAGGVLTALGAVCLAVFVAGMAAAWHNRHHTICPDGKPPVAQRPGLLGQTEYRCHDGRTVTTG
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Institute for Fundamental Biomedical Research
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