NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10005879

Scaffold Ga0209088_10005879


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10005879 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6967
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000744Metagenome / Metatranscriptome909Y
F036207Metagenome / Metatranscriptome170Y
F104427Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_1000587911F000744GGAGMTEDFINLNVHEIGILLSALQTLSVSDERVIAKDYGSAPALYNKLYSIYEQMDRSMVELRYELTPSF
Ga0209088_1000587913F104427GGAGMNNHDLQEFIEAFDDFMKHFEAEELYYEGRMVYENHRAEAKRIQEQEIEKEASRLEITVDYYLAEFM
Ga0209088_1000587920F036207N/AMINFISGTIFGIIVATIGFGGVATFMDGIMLQIQKQTVEMSRPTLPPPQQ
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Institute for Fundamental Biomedical Research
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