NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1019461

Scaffold Ga0209296_1019461


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1019461 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3887
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008079Metagenome / Metatranscriptome339Y
F012974Metagenome / Metatranscriptome275N
F018483Metagenome / Metatranscriptome235N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10194615F012974N/AMFTEAEQVIIQQVFNLPEIEQSYKINLIKLKPIKIRLTGTPDKECFCGSVRRKIWLKDFKQWYETYT
Ga0209296_10194617F008079N/AMKIKNEFIGVKVSHKGNNVNVSTENYTFCESIGLGYMFEEPTVSEPKVVKYKAVKGSIPAPEPEVTEEDGTEAE
Ga0209296_10194619F018483AGGAMMCEAVEAYIYSKKGVLVQINRVAIISNARQMEMLVYAYAYANGDR
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