NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1000974

Scaffold Ga0209296_1000974


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1000974 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23358
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (65.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F001464Metagenome / Metatranscriptome689Y
F003379Metagenome / Metatranscriptome490Y
F014144Metagenome / Metatranscriptome265Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100097418F003379GGAGVKKVWALIIISATAILSGLALSKFLKWVGQEEVFDFDLSDDVVD
Ga0209296_100097424F000369N/AMEIELSDHFDRMNKVVEELLKGSNPTQISSLTGFKRAEVVEYIDEWKSIVKNDSTSRDRAKEAVSGADQHYAMLIKEAWKTVDDADQQGQLNVKATALKLIADIETKRIAMLQQIGLLDNQEIADQIAETERKQDVLVSILRDVAKDYPDIRREIMKRLSQITGVVEPIEIIESKNVI
Ga0209296_10009743F001464GAGMARKNGSKARKKFLYFFLNNKLHKVIRLSRPRDEVVAWCYAEKKRMMYSYSEVLKKMENAYTIKDVGLILGRHKVTIEEYILQGKIKKPQKVYPISNPDSLWYKFMFSESDILDLHAYILEAGYVKNIPSRSELRALLKNNIILYTKTESGFVPVWKAD
Ga0209296_10009744F014144AGGCGGVEKRRVVTCDICNKDIEVRWGMFANETLNRHKKAEHK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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