NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209192_10007665

Scaffold Ga0209192_10007665


Overview

Basic Information
Taxon OID3300027752 Open in IMG/M
Scaffold IDGa0209192_10007665 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6260
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002629Metagenome / Metatranscriptome542Y
F006815Metagenome / Metatranscriptome364Y
F018560Metagenome / Metatranscriptome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0209192_100076651F018560N/ANMENTKCIEVRKDYYLLIIDDKSLGEFEKSQLRHIIEVIDNAI
Ga0209192_1000766517F002629N/AMIVNEAAWEKLKKQIEFYTEQDNDITDVQINYQVKEKKNKNYLKLNLKIDKWDRITE
Ga0209192_100076656F006815N/AMENNFSQETAQTKFDEYTYRIEALCNKIEELKAKIEVSQIFKQ

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