NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1210556

Scaffold Ga0209087_1210556


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1210556 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)740
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F007644Metagenome / Metatranscriptome347Y
F033037Metagenome / Metatranscriptome178Y
F033433Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_12105561F033037AGGAGMKPADKDKLNECLKILDTTDLGLSLVWLWTWSTIN
Ga0209087_12105562F033433GGAGMYDKPSLEILEVNYSISPGGIDEFEVYSLDERDHSSPPIFSSPVLEESVRFCYNLGKDFTVRTLAQWEEKELAYEASR
Ga0209087_12105563F000263AGGMNSEDIGLPPHLQRLVNYNVSGLDIMHGELKNLMLIAEQQLASAIETEEESEEAMDSMDRTRCEGALDTLVDIYNLTYQLSFAIGARDV
Ga0209087_12105564F007644N/AKIHLISLNQDLEMNPESINVIDIPGQIYATEHLLSVATDIMNNSTNERYE
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