NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1014446

Scaffold Ga0209087_1014446


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1014446 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3968
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023321Metagenome / Metatranscriptome210Y
F024533Metagenome205Y
F057311Metagenome / Metatranscriptome136Y
F081259Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_101444610F024533N/AMPQAQKTCPRCGTQHQKRGPFCSRSCGNVREHTEDDKATRSQKLTEYHQTPEGAATREKSSRIMSAKRKGEDWEEIGMDDFAVDIPDVT
Ga0209087_10144467F081259AGGAGGMLNKLIEWFIRPQLSEIEQYISAHNPKNTADVEMLINEFNYKRKLQCF
Ga0209087_10144468F023321AGGAMFLNQPQFPVFYTFNDLNRKAEEAAVKTIDFNKQFIDNTIAYFDSITDNQFTTYTKKVVTFNQNAAEDAKKIIKSESAKTKT
Ga0209087_10144469F057311GGCGGMQKKSSKVSQPKLRLEIESKTKFWHPVSRNGWWIKFSTYRDRYILLMIVSKYTAQSIIRYYEDEDEAVAFINFVTTCDPNDLIESA
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