NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1000500

Scaffold Ga0209087_1000500


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1000500 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24865
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (77.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011208Metagenome293N
F011649Metagenome288Y
F014487Metagenome / Metatranscriptome262Y
F014827Metagenome / Metatranscriptome259Y
F043281Metagenome / Metatranscriptome156N

Sequences

Protein IDFamilyRBSSequence
Ga0209087_10005001F043281N/ATYYFNFGVFAIRRKHVGLLSLPPLGTVPNHFGMQTWANIQAHLWDIPLSGLDPAYNCMTSVEDQYGLDRHKDAYIIHYAGQSGDLDKLAATIAADDAKLKELGR
Ga0209087_100050018F011208AGGAMTEDEIIKAYLSRLGKKGGSVSGPIKARKLSREHYAKVGKVQRERWDKFRRERQTEAQASKR
Ga0209087_100050023F011649AGGTGGMDEISAPPSAPIEKAKNGRDIFTDKIADEIVSACGSGFTLEKAGALVGVNPSTIRTWAQRKPDFARRVETSRKKHELSLLRDIELAGAKSWQAKAWMAERIYNHAIPSARLQVSQDVTHGINGNLAQLLAGIAGKKKAQVIECKDVTPKTLHTIRDNSYCATDATQTIVITTPKVLGKTRHRRMKTRKPRAESLAKYTTTPPLPPPAAV
Ga0209087_100050026F014827N/AVLRAILEIIAAVFRIIPGWKDKRTQNLEGDWRKNRDAIDGDLRSESWWLRNNDPSNKHNGGS
Ga0209087_100050038F014487N/AMPLLLLTALLCSCSPKKTDNTGLPRYSDMGAAEDAGNVK
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