NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208565_1168364

Scaffold Ga0208565_1168364


Overview

Basic Information
Taxon OID3300027662 Open in IMG/M
Scaffold IDGa0208565_1168364 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)633
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000562Metagenome / Metatranscriptome1023Y
F017175Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0208565_11683641F000562AGGGGGMPDDKAGAADDTRTLRARFPRWGILFDPLESMWVAVRGKRTLVAASSPEKLTEQVEAATRGEAGPDEGEKTQRWRALHKHERG
Ga0208565_11683642F017175N/ASMVHTAPYAMGAFALCAALSMLLPRTAVSEEALTES

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