NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208974_1000981

Scaffold Ga0208974_1000981


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1000981 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11363
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012098Metagenome / Metatranscriptome283Y
F016389Metagenome / Metatranscriptome247Y
F030064Metagenome186Y
F084140Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100098113F030064AGGAGVTTTFATIGIIAGALISIGILLSPFYKKLKRWSAWFERFMRDWEGEEEEPGRARVPGVMERLNKLDGELSNNGGSTTKDKVDQLHDNQAIFMKSVSERLSAIENCLTVTPTDGPKQEKI
Ga0208974_100098116F016389N/AMKLIRKFAMQGHAVPSGVHSPRGPFPPEVLAQPRMDYGDQHSDSLHVGLDDVRFFKCRACEEVLLETELTNHDCEEINGY
Ga0208974_100098119F012098N/AMPKVHNIGSNHFVQFTKFPYTWGSKLLVRGWTQEIEEPYRTSQPFIVRLPGYKALVLGRWSGMRNEEEALNGALERRDVTYDDFTEKAGWTAPEQSREAGRQDIYSRFDLMDGAIDVHIGQELDRLAKTSE
Ga0208974_100098120F084140GGAGMYILGKNLTGWQKHQSDADLDELLMGAEAFYAIAKELKKRS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.