Scaffold Ga0209470_1000092

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209470_1000092

Scaffold Ga0209470_1000092

Overview

Basic Information
Taxon OID	3300026324 Open in IMG/M
Scaffold ID	Ga0209470_1000092 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	62878
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (75.44%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013195	Metagenome / Metatranscriptome	273	Y
F079879	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209470_10000922	F013195	N/A	MRDRPPVCASWPERLTKTPCAVTLSMSLGDFIEVLEKNRRASPARRPGPVGLNGARARATATSDRDTGASSSSSVHFPLELTEPGPIVLPTIPQDGRGRPAALTSVRAQKVIAMACTGASIPVCAAAGGVTPNTLKSWLRRKDHEAYLVFQRSFAEAVTYATLAALRAIMEEVASDPKHAFAFLARRDPDRWSKVVG
Ga0209470_100009227	F079879	GGAG	MAADKAMIARDKVAAFLLAHRGRAFCERCLGHAVGIDPSTGHRAATRIARAGGFVREYEVCSECGESRLVTRAPA

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