NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208275_1023140

Scaffold Ga0208275_1023140


Overview

Basic Information
Taxon OID3300026182 Open in IMG/M
Scaffold IDGa0208275_1023140 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF49B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1311
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015657Metagenome / Metatranscriptome253Y
F022077Metagenome / Metatranscriptome216N
F083821Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0208275_10231401F015657N/AMEEGQEILDKRYKVIKKLGSGAFGDIYKVEKKKTGDFLAAKVEKAVKN
Ga0208275_10231402F022077N/AMLFWESKLIHKLRGKTYVPNLHFVGDEKTEDGKMFHVMVMDLLGKSLED
Ga0208275_10231404F083821GAGGMKRHGYDTKNPDFIWNKNRLALEKEAIKKQMLGVINKKPAKKQTVAGETTAGQ

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