NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209532_1011984

Scaffold Ga0209532_1011984


Overview

Basic Information
Taxon OID3300025696 Open in IMG/M
Scaffold IDGa0209532_1011984 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4546
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039870Metagenome163Y
F049595Metagenome / Metatranscriptome146N
F064194Metagenome / Metatranscriptome129N
F086304Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209532_101198410F064194GAGMDNRMKTYLVEINAVVWKQIEVRAESVEAADTLAHELFNLAADGCPERYDQQTSQIWEDDSPNIRNWKEVM
Ga0209532_101198411F049595AGGAGGMEQVDYRFENHGSIFLCQPLNGAAKDNLDQACEGTEDFHIRWGNALVIDHRFANDIAQQLIEEGWIIE
Ga0209532_10119845F086304AGGAGGMIILELNRVCKSSGRDEGKIFLTGNTFAVTSEYHRWGKFERDICVVDNGNSNNGGYWVSDSYGSIVSVIEEQTGQC
Ga0209532_10119846F039870GGAGGMPMFKVNVTVYHAFYDIEASSEEEAKELAASDYIWDDHIKDVIIDVEEVDDDNS
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Institute for Fundamental Biomedical Research
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