NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208055_1000827

Scaffold Ga0208055_1000827


Overview

Basic Information
Taxon OID3300025220 Open in IMG/M
Scaffold IDGa0208055_1000827 Open in IMG/M
Source Dataset NameMarine microbial communities from the Deep Pacific Ocean - MP2159 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7491
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon SCGC AC-337_F14(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouthwest of Acapulco, Mexico, North Pacific Ocean
CoordinatesLat. (o)12.0Long. (o)-108.06Alt. (m)Depth (m)3103.11
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078841Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0208055_10008271F078841AGAAGMFDDSDVVHSESRSDKAKRAISEYLDEYGQVRATELKKEVCDELGICSEKIFYRCLFELVKSKRIIKNEQNRGNVSYYKPDWGVYENMINTDVIKQGTSTVRILAEVGRHENEVMQLTLLKMAFSNIMGMYASMTLITQQPSKAKTSAVITSTLKNTIPELLEMFSIALEKCGKNRSRILSSLMDYRDGNMGGGWVLENHPDFKK

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