| Basic Information | |
|---|---|
| Taxon OID | 3300025103 Open in IMG/M |
| Scaffold ID | Ga0208013_1130624 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 613 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -14.51 | Long. (o) | -76.2 | Alt. (m) | Depth (m) | 45 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F044547 | Metagenome | 154 | Y |
| F065107 | Metagenome / Metatranscriptome | 128 | Y |
| F098028 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208013_11306241 | F065107 | AGG | MGVGGRQIMPQPKKEIVEERQVFMQSILDCVHKPSVFSEMFLGHKLFDYNVQYVDCEDRFIVYRSGRQVGKTMST |
| Ga0208013_11306242 | F098028 | GGTGG | MFGWLRREKFILPPEEYQVKLVKDIEKKLESAKGSERTKLTYMLANQLMILNQILNNKKPNRPIKMNNKGKWVWVEDK |
| Ga0208013_11306243 | F044547 | N/A | GNIPDRNTKSEVNTLLKIISTIGEISSKIVVSEEQKFNKQGDIESIFRQIKAQKTVD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |