NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208012_1000289

Scaffold Ga0208012_1000289


Overview

Basic Information
Taxon OID3300025066 Open in IMG/M
Scaffold IDGa0208012_1000289 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19121
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (14.63%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001802Metagenome / Metatranscriptome632Y
F019252Metagenome / Metatranscriptome231Y
F029277Metagenome / Metatranscriptome189Y
F087890Metagenome110N
F103909Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0208012_100028911F103909GGAGMRDYSITRRKGEWYDAKVTDSFGVEHQNYFEHAHEANDWIMYIWEKELPPLTDAEREELLASAIHDCKQMDKRSGRRAIL
Ga0208012_100028913F001802N/AMQKIKHLKKDYVQLGNLIYRPYTVCAIPANFGCIEFNEKEGISEWFNYKGYTYIFDSIAK
Ga0208012_100028918F087890N/AMKKFLKDKSGPIMMGIGAMLLVGDLMGVEGIITFAVGIILIVEGVDRL
Ga0208012_100028922F019252AGAAGMKLIDKVKPEVLDALAESKIEFSSSYRRIILSLKSVDRYKQLTIDEIQTLICFLPDEFRPQCDIDWYYGDKILQEKYKL
Ga0208012_10002898F029277N/AMNREELKRLFLTFPTLDIPEKKQIIVEIDKNPHWPGYGTIEILRDGPNGYSSFKTHQELPMKYVFNCNEYRSGEYELIVKE
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Institute for Fundamental Biomedical Research
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