NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244777_10027313

Scaffold Ga0244777_10027313


Overview

Basic Information
Taxon OID3300024343 Open in IMG/M
Scaffold IDGa0244777_10027313 Open in IMG/M
Source Dataset NameCombined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3618
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035726Metagenome / Metatranscriptome171Y
F046311Metagenome151Y
F077338Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0244777_1002731312F035726AGGAGMSLINKKETKVKYYSDLTKGEMVKIISEQKGLNLSALDRATKIDIEEIAKALNV
Ga0244777_100273134F077338AGGAVGVEKALDSKKVLQAVNLSPSESWIEKLVHVHPMRQITYASIIQVSVFFCMLGGFQVNQWIFST
Ga0244777_100273139F046311AGCAGMGSVAVMRTPRQQRNHENLQRQKQRVINYLNENEMIVFFLLGLSILVMVGCLAVALA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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