Basic Information | |
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Family ID | F077338 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 117 |
Average Sequence Length | 57 residues |
Representative Sequence | MEKKILQVVNLSPSESWVEKLTDIHPMKQIFWASIIQVSVFFGMLGMFQVNSWIFSH |
Number of Associated Samples | 103 |
Number of Associated Scaffolds | 117 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 65.81 % |
% of genes near scaffold ends (potentially truncated) | 34.19 % |
% of genes from short scaffolds (< 2000 bps) | 67.52 % |
Associated GOLD sequencing projects | 97 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.43 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (69.231 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (11.966 % of family members) |
Environment Ontology (ENVO) | Unclassified (52.991 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (92.308 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 51.76% β-sheet: 0.00% Coil/Unstructured: 48.24% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.43 |
Powered by PDBe Molstar |
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Pfam ID | Name | % Frequency in 117 Family Scaffolds |
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PF01223 | Endonuclease_NS | 10.26 |
PF00145 | DNA_methylase | 7.69 |
PF10614 | CsgF | 6.84 |
PF00550 | PP-binding | 5.13 |
PF03783 | CsgG | 3.42 |
PF04773 | FecR | 2.56 |
PF01521 | Fe-S_biosyn | 1.71 |
PF05065 | Phage_capsid | 1.71 |
PF05226 | CHASE2 | 1.71 |
PF13186 | SPASM | 0.85 |
PF01755 | Glyco_transf_25 | 0.85 |
PF16075 | DUF4815 | 0.85 |
PF07012 | Curlin_rpt | 0.85 |
PF00117 | GATase | 0.85 |
PF01507 | PAPS_reduct | 0.85 |
PF01592 | NifU_N | 0.85 |
COG ID | Name | Functional Category | % Frequency in 117 Family Scaffolds |
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COG1864 | DNA/RNA endonuclease G, NUC1 | Nucleotide transport and metabolism [F] | 10.26 |
COG0270 | DNA-cytosine methylase | Replication, recombination and repair [L] | 7.69 |
COG1462 | Curli biogenesis system outer membrane secretion channel CsgG | Cell wall/membrane/envelope biogenesis [M] | 3.42 |
COG0316 | Fe-S cluster assembly iron-binding protein IscA | Posttranslational modification, protein turnover, chaperones [O] | 1.71 |
COG4252 | Extracytoplasmic sensor domain CHASE2 (specificity unknown) | Signal transduction mechanisms [T] | 1.71 |
COG4653 | Predicted phage phi-C31 gp36 major capsid-like protein | Mobilome: prophages, transposons [X] | 1.71 |
COG4841 | Uncharacterized conserved protein YneR, related to HesB/YadR/YfhF family | Function unknown [S] | 1.71 |
COG0822 | Fe-S cluster assembly scaffold protein IscU, NifU family | Posttranslational modification, protein turnover, chaperones [O] | 0.85 |
COG3306 | Glycosyltransferase involved in LPS biosynthesis, GR25 family | Cell wall/membrane/envelope biogenesis [M] | 0.85 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 69.23 % |
All Organisms | root | All Organisms | 30.77 % |
Visualization |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Habitat | Taxonomy | Distribution |
Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 11.97% |
Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 11.97% |
Salt Marsh | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh | 11.11% |
Estuarine | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine | 10.26% |
Seawater | Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater | 8.55% |
Seawater | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater | 5.98% |
Marine | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine | 5.13% |
Pelagic Marine | Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine | 5.13% |
Estuarine Water | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water | 4.27% |
Seawater | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater | 3.42% |
Freshwater To Marine Saline Gradient | Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient | 2.56% |
Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine | 2.56% |
Seawater | Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater | 1.71% |
Marine | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine | 1.71% |
Seawater | Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater | 1.71% |
Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 0.85% |
Marine | Environmental → Aquatic → Marine → Inlet → Unclassified → Marine | 0.85% |
Worm Burrow | Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow | 0.85% |
Marine Surface Water | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water | 0.85% |
Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 0.85% |
Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 0.85% |
Estuarine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine | 0.85% |
Pelagic Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine | 0.85% |
Freshwater And Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine | 0.85% |
Marine Water | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water | 0.85% |
Pond Water | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water | 0.85% |
Saline Water And Sediment | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment | 0.85% |
Saline Water And Sediment | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment | 0.85% |
Macroalgal Surface | Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface | 0.85% |
Visualization |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Taxon OID | Sample Name | Habitat Type | IMG/M Link |
---|---|---|---|
3300000101 | Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010 | Environmental | Open in IMG/M |
3300000115 | Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011 | Environmental | Open in IMG/M |
3300000116 | Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010 | Environmental | Open in IMG/M |
3300000928 | Marine plume microbial communities from the Columbia River - 25 PSU | Environmental | Open in IMG/M |
3300000947 | Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92 | Host-Associated | Open in IMG/M |
3300001959 | Mangrove swamp microbial communities from Isabella Island, Equador - GS032 | Environmental | Open in IMG/M |
3300002230 | Marine microbial communities from the Baltic Sea - M1t2 FKB2 (103N) | Environmental | Open in IMG/M |
3300002524 | Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C49A8_35 | Environmental | Open in IMG/M |
3300004097 | Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG | Environmental | Open in IMG/M |
3300004448 | Marine viral communities from Newfoundland, Canada BC-1 | Environmental | Open in IMG/M |
3300004460 | Marine viral communities from Newfoundland, Canada BC-1 | Environmental | Open in IMG/M |
3300004829 | Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs | Environmental | Open in IMG/M |
3300005239 | Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine | Environmental | Open in IMG/M |
3300005510 | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45 | Environmental | Open in IMG/M |
3300005512 | Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water | Environmental | Open in IMG/M |
3300005611 | Saline surface water microbial communities from Etoliko Lagoon, Greece | Environmental | Open in IMG/M |
3300005738 | Seawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T0 | Environmental | Open in IMG/M |
3300005837 | Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18 | Environmental | Open in IMG/M |
3300005942 | Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757 | Environmental | Open in IMG/M |
3300006025 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA | Environmental | Open in IMG/M |
3300006392 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_RNA2 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300006752 | Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG | Environmental | Open in IMG/M |
3300006789 | Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG | Environmental | Open in IMG/M |
3300006810 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 | Environmental | Open in IMG/M |
3300006870 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA | Environmental | Open in IMG/M |
3300006874 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA | Environmental | Open in IMG/M |
3300006925 | Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG | Environmental | Open in IMG/M |
3300007345 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 | Environmental | Open in IMG/M |
3300007539 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG | Environmental | Open in IMG/M |
3300007544 | Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3 | Environmental | Open in IMG/M |
3300007557 | Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.715 | Environmental | Open in IMG/M |
3300007558 | Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.733 | Environmental | Open in IMG/M |
3300007625 | Estuarine microbial communities from the Columbia River estuary - metaG 1546B-02 | Environmental | Open in IMG/M |
3300007667 | Estuarine microbial communities from the Columbia River estuary - metaG 1558A-3 | Environmental | Open in IMG/M |
3300007715 | Estuarine microbial communities from the Columbia River estuary - metaG S.751 | Environmental | Open in IMG/M |
3300008964 | Estuarine microbial communities from the Columbia River estuary - metaG 1551A-02 | Environmental | Open in IMG/M |
3300009055 | Estuarine microbial communities from the Columbia River estuary - metaG 1556B-3 | Environmental | Open in IMG/M |
3300009071 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 | Environmental | Open in IMG/M |
3300009077 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328 | Environmental | Open in IMG/M |
3300009435 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 | Environmental | Open in IMG/M |
3300009497 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503 | Environmental | Open in IMG/M |
3300009507 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 | Environmental | Open in IMG/M |
3300009544 | Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome | Environmental | Open in IMG/M |
3300010297 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNA | Environmental | Open in IMG/M |
3300010299 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA | Environmental | Open in IMG/M |
3300010318 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_DNA | Environmental | Open in IMG/M |
3300012963 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_RNA1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300017710 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28 | Environmental | Open in IMG/M |
3300017719 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 | Environmental | Open in IMG/M |
3300017748 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21 | Environmental | Open in IMG/M |
3300017755 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09 | Environmental | Open in IMG/M |
3300017771 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13 | Environmental | Open in IMG/M |
3300017786 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18 | Environmental | Open in IMG/M |
3300017818 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300017950 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly) | Environmental | Open in IMG/M |
3300017957 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300017967 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300017969 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300017986 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300018041 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly) | Environmental | Open in IMG/M |
3300018416 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300018421 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300018876 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300020055 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101411CT metaG (spades assembly) | Environmental | Open in IMG/M |
3300020175 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2 | Environmental | Open in IMG/M |
3300020185 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1 | Environmental | Open in IMG/M |
3300020385 | Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965) | Environmental | Open in IMG/M |
3300021085 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 | Environmental | Open in IMG/M |
3300021347 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266 | Environmental | Open in IMG/M |
3300021356 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245 | Environmental | Open in IMG/M |
3300021375 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132 | Environmental | Open in IMG/M |
3300021425 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284 | Environmental | Open in IMG/M |
3300021957 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D | Environmental | Open in IMG/M |
3300021959 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D | Environmental | Open in IMG/M |
3300021960 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D | Environmental | Open in IMG/M |
3300022187 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3) | Environmental | Open in IMG/M |
3300024236 | Seawater microbial communities from Monterey Bay, California, United States - 67D | Environmental | Open in IMG/M |
3300024255 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG | Environmental | Open in IMG/M |
3300024328 | Seawater microbial communities from Monterey Bay, California, United States - 44D | Environmental | Open in IMG/M |
3300024343 | Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction | Environmental | Open in IMG/M |
3300025070 | Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes) | Environmental | Open in IMG/M |
3300025103 | Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025108 | Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025151 | Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes) | Environmental | Open in IMG/M |
3300025668 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_100m_DNA (SPAdes) | Environmental | Open in IMG/M |
3300025751 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
3300025770 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_165m_DNA (SPAdes) | Environmental | Open in IMG/M |
3300025771 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
3300025840 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
3300025849 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes) | Environmental | Open in IMG/M |
3300025870 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes) | Environmental | Open in IMG/M |
3300026183 | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG (SPAdes) | Environmental | Open in IMG/M |
3300027170 | Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_35 (SPAdes) | Environmental | Open in IMG/M |
3300027191 | Estuarine microbial communities from the Columbia River estuary - metaG S.737 (SPAdes) | Environmental | Open in IMG/M |
3300027233 | Estuarine microbial communities from the Columbia River estuary - metaG 1550B-02 (SPAdes) | Environmental | Open in IMG/M |
3300027757 | Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 (SPAdes) | Environmental | Open in IMG/M |
3300027810 | Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes) | Environmental | Open in IMG/M |
3300028008 | Seawater microbial communities from Monterey Bay, California, United States - 1D_r | Environmental | Open in IMG/M |
3300028189 | Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_135m | Environmental | Open in IMG/M |
3300028391 | Seawater microbial communities from Monterey Bay, California, United States - 24D | Environmental | Open in IMG/M |
3300031766 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515 | Environmental | Open in IMG/M |
3300032073 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416 | Environmental | Open in IMG/M |
3300032136 | Coastal sediment microbial communities from Delaware Bay, Delaware, United States - CS-6 worm burrow | Environmental | Open in IMG/M |
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
DelMOSum2010_101131554 | 3300000101 | Marine | MEKKILQVVNLSPSESWVEKLPEVHPMKQIFWASIIQVTVFFGMLGMFQMNQWIFST* |
DelMOSum2011_101134332 | 3300000115 | Marine | VDKKILQVVNLSPSESWIEKLPNIHPMKQITYAALVQVVVFFGMLGMFQVNQWIFSA* |
DelMOSpr2010_100238251 | 3300000116 | Marine | DKKILQVVNLSPSESWVEKLPEVHPMKQIFWASIIQVTVFFGMLGMFKVNSWIFSI* |
OpTDRAFT_100401162 | 3300000928 | Freshwater And Marine | MDKKVLQVVNLAPSESWIEKLVEVHPMKQITYAAIVQVVVFFSMLGAFQINTWIFS |
BBAY92_101401572 | 3300000947 | Macroalgal Surface | MEKKILQVVNLSPSESWVEKLTQVHPMKQIFWASIIQVSVFFCMLGAFQVNSWIFGH* |
GOS2247_10166803 | 3300001959 | Marine | MEKKILQVVNLSPSESWVEKLTTIHPMKQITYATIIQVAMFFSMLGMFQLNSWIFST* |
M1t2FKB2103N_12046632 | 3300002230 | Marine | MKKILQVVNLSPSESWIEKLADMHPMKQITYASILQVVVFFFMLFMFKVIDGII* |
JGI24927J35514_10014273 | 3300002524 | Marine | MDKKVLQVVNLAPSESWIEKLVEVHPMKQITYAAIVQVVVFFSMLGAFQINTWIFSA* |
Ga0055584_1004853362 | 3300004097 | Pelagic Marine | LEKKILQVVNLSPSESWIEKLPNIHPMKQITYAALVQVVVFFGMLGMFQVNQWIFSA* |
Ga0065861_10229854 | 3300004448 | Marine | MNKKVLQVVNLSPSESWIEKLVHVHPMKQITYASILQVVVFFFMLFMFKVIGSYV* |
Ga0066222_11845352 | 3300004460 | Marine | VDKKILQVVNLSPSESWIEKLEEVHPMKQITYAAIVQVVVFFGMLGMFQVNQWIFST* |
Ga0068515_1160352 | 3300004829 | Marine Water | MERKILQVVNLSPSESWVEKLTTIHPMKQITYATIIQVAMFFSMLGMFKLNSWIFST* |
Ga0073579_11724982 | 3300005239 | Marine | VDKKILQVVNLSPSESWVEKLPNIHPMKQITYAALVQVVVFFGMLGMFQVNQWIFSA* |
Ga0066825_100498643 | 3300005510 | Marine | VGVEKALDSKKVLQVVNLSPNESIVEKLTKMHPMRQITYASIIQVTMFFGMLGMFQVNSWIFST* |
Ga0074648_10014119 | 3300005512 | Saline Water And Sediment | MERKILQVVNLSPSESWVEKLTHIHPMKQIIWASIIQVTMFFSMLGMFQINSWIFGH* |
Ga0074647_100044334 | 3300005611 | Saline Water And Sediment | RKILQVVNLSPSESWVEKLTHIHPMKQIIWASIIQVTMFFSMLGMFQINSWIFGH* |
Ga0076926_1098267 | 3300005738 | Marine | MKYLAILVFVDKKILQVVNLSPSESWVEKLTHVHPMKQITYATIVQATVFFGMLGMFKVNSWIFSV* |
Ga0078893_1000929139 | 3300005837 | Marine Surface Water | MEKKILQVVNLSPSESWVEKLPEVHPMKQIFWASIIQVTVFFGMLGMFQMNQWIFSI* |
Ga0070742_100220114 | 3300005942 | Estuarine | VDKKILQIVNLAPSESWIEKLTHVHPMKQIFWASIVQVSVFFGMLGMFQVN |
Ga0075474_100344032 | 3300006025 | Aqueous | MKYLAILVFVDKKILQVVNLSPSESWVEKLTHVHPMKQITYATIVQATVFFGMLGMFKVNSWIFSI* |
Ga0075507_15048802 | 3300006392 | Aqueous | VDKKILQVVNLSPSESWVEKLTHVHPMKQITYATIVQATVFFGMLGMFKVNSWIFSI* |
Ga0098048_11566812 | 3300006752 | Marine | MDKKVLQVVNLAPSESWIEKLVEIHPMKQITYAAIVQVVVFLSMLGAFQINTWIFSA* |
Ga0098048_12423762 | 3300006752 | Marine | VEKKILQAVNLSPSEEWVEKLTEIHPMKQIFWASIIQVSVFFGMLGMFQVNSWIFSH* |
Ga0098054_10553942 | 3300006789 | Marine | VEKKILQAVNLSPSEEWVEKLTEIHPMKQIFWASIIQVSVFFGMLGMFQINQWIFSH* |
Ga0070754_100271512 | 3300006810 | Aqueous | MKYLAILVFVDKKILQVVNLSPSESWVEKLTHVHPMKQITYATIVQATVFFGMLGMFKINSWIFSI* |
Ga0070754_102453963 | 3300006810 | Aqueous | MEKKILQVVNLSPSESWVEKLTQVHPMKQIVWASIIQVSVFFCMLGAFQVNSWIFGH* |
Ga0075479_100404021 | 3300006870 | Aqueous | MKYLAILVFVDKKILQVVNLSPSESWVEKLTHVHPMKQITYATIVQAT |
Ga0075475_100620054 | 3300006874 | Aqueous | MEKKILQVVNLSPSESRVEKLTQVHPMKQIVWASIIQVSVFFCMLGAFQVNSWIFGH* |
Ga0098050_11889022 | 3300006925 | Marine | MDKKVLQVVNLAPSESWIEKLVEIHPMRQITYAAIVQVVVFLSMLGAFQINTWIFSA* |
Ga0070752_10817602 | 3300007345 | Aqueous | MEKKILQVVNLSPSESWVEKLTQVHPMKQIVWASIIQVSVFFCMLGAFQVNSWIFSI* |
Ga0099849_10028667 | 3300007539 | Aqueous | MDKKVLQVVNLSPSESWIEKLTHIHPMKQITYAAIIQVTVFFGMLGIFQVNQWIFSA* |
Ga0102861_10612342 | 3300007544 | Estuarine | MDKKVLQVVNLAPSESWIEKLVEVHPMKQITYAAIVQVVVFFSMLGAFQINTWIFST* |
Ga0102821_10028127 | 3300007557 | Estuarine | VDKKVLQVVNLAPSESWIEKMVHVHPMKQIFWASIVQVSVFFGMLGMFQVNQWIFST* |
Ga0102822_10682623 | 3300007558 | Estuarine | VDKKILQIVNLAPSESWIEKLTHVHPMKQIFWASIVQVSVFFGMLGMFQVNQWIFS |
Ga0102870_11188462 | 3300007625 | Estuarine | MDKKVLQVVNLAPSESWIEKLVEVHPMKQITYAAIVQVVVFFSMLGAFQIN |
Ga0102910_10745203 | 3300007667 | Estuarine | VDKKVLQVVNLAPSESWIEKMVHVHPMKQIFWASIVQVSVFFGMLGMFQVNQWIFS |
Ga0102827_10444941 | 3300007715 | Estuarine | RINKVDKKILQIVNLAPSESWVEKLTHVHPMKQIFWASIVQVSVFFGMLGMFQVNQWIFST* |
Ga0102889_10515144 | 3300008964 | Estuarine | EFVDKKVLQVVNLAPSESWIEKMVHVHPMKQIFWASIVQVSVFFGMLGMFQVNQWIFST* |
Ga0102905_10696511 | 3300009055 | Estuarine | VNLAPSESWIEKLVEVHPMKQIFWASIVQVSVFFGMLGMFQVNQWIFST* |
Ga0115566_101672953 | 3300009071 | Pelagic Marine | MEKKILQVVNLSPSESWVEKLPEVHPMKQIFWASIIQVTVFFGMLGMFQVNQWIFSI* |
Ga0115552_10733143 | 3300009077 | Pelagic Marine | LEKKILQVVNLSPSESWIEKLPNIHPINQITYAALVQVVVFFGMLGMF* |
Ga0115546_10153315 | 3300009435 | Pelagic Marine | MEKKILQVVNLSPSESWVEKLPEVHPMKQIFWASIIQVTVFFGMLGMFKVNQWIFSI* |
Ga0115569_104027712 | 3300009497 | Pelagic Marine | LEKKRLQVVNLSPSESWIEKPPNIHPMKQITYAALVQVVVFFGMLGMFQVN |
Ga0115572_107901432 | 3300009507 | Pelagic Marine | VFVDKKILQVVNLSPSESWVEKLSEVHPMKQITYATIVQATVFFGMLGMFKVNSWIFSI* |
Ga0115006_100974392 | 3300009544 | Marine | MNKKVLQVVNLSPSESWIEKMEHVHPMKQITYASILQVVVFFFMLFMFKVIGSFV* |
Ga0129345_10926351 | 3300010297 | Freshwater To Marine Saline Gradient | KIMKYLAILVFVDKKILQVVNLSPSESWVEKLTHVHPMKQITYATIVQATVFFCMLGAFQVNSWIFGH* |
Ga0129342_12179772 | 3300010299 | Freshwater To Marine Saline Gradient | MEKKILQVVNLSPSESRVEKLTQVHPMKQIVWASIIQVSVFLCMLGAFQVNSWIFGH* |
Ga0136656_11241682 | 3300010318 | Freshwater To Marine Saline Gradient | MEKKILQVVNLSPSESRVEKLTQVHPMKQIVWASIIQFSVFFCMLGAFQVNSWIFGH* |
Ga0129340_12822362 | 3300012963 | Aqueous | FVDKKILQVVNLSPSESWVEKLTHVHPMKQITYATIVQATVFFCMLGAFQVNSWIFGH* |
Ga0181403_10003525 | 3300017710 | Seawater | MEKKILQVVNLSPSESWVEKLTNVHPMKQITYASIIQITVFFAMLGMFKVNSWIFSI |
Ga0181390_10681992 | 3300017719 | Seawater | MKKILQIVNLSPNESIVEKLADIHPMKQITYASILQVVVFLFMLLMFKVIGSFV |
Ga0181393_10289574 | 3300017748 | Seawater | VDKKVLQVVNLAPSESWVEKMVHVHPMKQIFWASIVQVSVFFGMLGMFQVNQWIFST |
Ga0181393_11584842 | 3300017748 | Seawater | MEKKILQVVNLSPSESWVEKLTNVHPMKQITYASIIQITVFFAMLGMFKVNSWIFS |
Ga0181411_10566551 | 3300017755 | Seawater | MEKKILQVVNLSPSESWVEKLTDIHPMKQIFWASIIQVSVFFGMLGMFQ |
Ga0181425_10998494 | 3300017771 | Seawater | TNKMEKKILQAVNLSPSEEWVEKLTEIHPMRQIFWASIIQVTVFFGMLGMFQINQWIFSH |
Ga0181424_100391783 | 3300017786 | Seawater | VDKKVLQVVNLAPSESWIEKMVHVHPMKQIFWASIIQVSVFFGMLGMFQVNQWIFST |
Ga0181565_102676983 | 3300017818 | Salt Marsh | MEKKILQVVNLSPSESWVEKLTNIHPMKQITYATIIQVSMFFSMLGMFQLNSWIFGH |
Ga0181607_102128242 | 3300017950 | Salt Marsh | MEKKILQVVNLSPSESWVEKLTQVHPMKQITYATIIQVAMFFSMLGMFKLNSWIFST |
Ga0181571_105972912 | 3300017957 | Salt Marsh | MEKKILQVVNLSPSESWVEKLTQVHPMKQITYATIIQVAMFFSMLGMFQLNSWIFGH |
Ga0181590_107979091 | 3300017967 | Salt Marsh | TAMQRKALQIVNLSPSESIVEKLTEIHPMRQITYASIIQVSVFFGMLGAFQINSWIFSA |
Ga0181590_109342032 | 3300017967 | Salt Marsh | MEKKILQVVNLSPSESWVEKLTQVHPMKQIVWASIIQVSVFFCMLGAFQVNSWIFGH |
Ga0181585_101981703 | 3300017969 | Salt Marsh | MEKKILQVVNLSPSESWVEKLTQVHPMKQITYATIIQVSMFFSMLGMFQLNSWIFGH |
Ga0181569_102111952 | 3300017986 | Salt Marsh | MEKKILQVVNLSPSESWVEKLTTIHPMKQITYATIIQVAMFFSMLGMFKLNSWIFGH |
Ga0181601_106739111 | 3300018041 | Salt Marsh | QIVNLSPSESWVEKLTQVHPMKQITYATIIQVAMFFSMLGMFKLNSWIFST |
Ga0181553_101336925 | 3300018416 | Salt Marsh | MEKKILQVVNLSPSESWVEKLTQVHPMKQIVWASIIQVSVFFCMLGAFQ |
Ga0181553_106330102 | 3300018416 | Salt Marsh | MEKKILQVVNLSPSESWVEKLTQVHPMKQITYATIIQVAMFFSMLGMFKLNSWIFGH |
Ga0181592_100225039 | 3300018421 | Salt Marsh | MEKKILQVVNLSPSESWVEKLTQVHPMKQIVWASIIQISVFFCMLGAFQVNSWIFGH |
Ga0181564_102577781 | 3300018876 | Salt Marsh | MEKKILQVVNLTPSESWVEKLTNIHPMKQITYATIIQVSMFFSMLGMFQLNSWIFGH |
Ga0181575_102310742 | 3300020055 | Salt Marsh | MEKKILQVVNLSPSESWVEKLTNIHPMKQITYATIIQVAMFFSMLGMFKLNSWIFGH |
Ga0206124_100744784 | 3300020175 | Seawater | MEKKILQVVNLSPSESWVEKLPEVHPMKQIFWASIIQVTVFFGMLGMFQVNQWIFSI |
Ga0206131_100596682 | 3300020185 | Seawater | MEKKILQVVNLSPSESWVEKLPEVHPMKQIFWASIIQVTVFFGMLGMFQMNQWIFSI |
Ga0211677_102628783 | 3300020385 | Marine | MDKKVLQVVNLAPSESWIEKLVEVHPMKQITYAAIVQVVVFFSMLGAFQINTWIFSA |
Ga0206677_100001554 | 3300021085 | Seawater | MKKILQIVNLSPNESIVEKLADIHPMKQITYASILQVVVFFFMLLMFKVIGSFV |
Ga0206677_100066968 | 3300021085 | Seawater | MEKKILQAVNLSPSEEWVEKLTEIHPMRQIFWASIIQVTVFFGMLGMFQINQWIFSH |
Ga0213862_103492552 | 3300021347 | Seawater | MDKKVLQVVNLSPSESWIEKLTHIHPMKQITYAAIIQVTVFFGMLGIFQVNQWIFSA |
Ga0213858_105104142 | 3300021356 | Seawater | MEKKILQVVNLSPSESWVEKLTTIHPMKQITYATIIQVAMFFSMLGMFKLNSWIFST |
Ga0213869_1000454212 | 3300021375 | Seawater | MKYLAILVFVDKKILQVVNLSPSESWIEKLTHVHPMKQITYATIVQATVFFGMLGMFKVNSWIFSV |
Ga0213869_100045712 | 3300021375 | Seawater | VDKKILQVVNLSPSESWIEKLPNIHPMKQITYAALVQVVVFFGMLGMFQVNQWIFSA |
Ga0213866_102546331 | 3300021425 | Seawater | KILQVVNLSPSESWVEKLTTIHPMKQITYATIIQVAMFFSMLGMFKLNSWIFGH |
Ga0213866_104353932 | 3300021425 | Seawater | MEKKILQVVNLSPSESWVEKLTTIHPMKQITYATIIQVSMFFSMLGMFQVNSWIFGH |
Ga0222717_100112197 | 3300021957 | Estuarine Water | MEKKILQVVNLSPSESWVEKLTDIHPMKQIFWASIIQVSVFFGMLGMFQVNSWIFSH |
Ga0222716_101605841 | 3300021959 | Estuarine Water | MDKKVLQVVNLAPSESWIEKLVEVHPMKQITYAAIVQVVVFFSMLGAFQINTWIFST |
Ga0222716_105456863 | 3300021959 | Estuarine Water | QVVNLSPSESWVEKLTDIHPMKQIFWASIIQVSVFFGMLGMFQVNSWIFSH |
Ga0222715_100230422 | 3300021960 | Estuarine Water | MEKKILQAVNLSPSEEWVEKLTEIHPMRQIFWASIIQVTVFFGMLGMFQVNQWIFSH |
Ga0222715_100857364 | 3300021960 | Estuarine Water | VDKKVLQVVNLAPSESWIEKMVHVHPMKQIFWASIVQVSVFFGMLGMFQVNQWIFST |
Ga0196899_10247761 | 3300022187 | Aqueous | VDKKILQVVNLSPSESWVEKLTHVHPMKQITYATIVQATVFFGMLGMFKVNSWIFSI |
Ga0196899_10694213 | 3300022187 | Aqueous | MKYLAILVFVDKKILQVVNLSPSESWVEKLTHVHPMKQITYATIVQATV |
Ga0228655_10354671 | 3300024236 | Seawater | MEKKILQAVNLSPSEEWVEKLTEIHPMKQIFWASIIQVTVFFGMLGMFQVNQWIFSH |
(restricted) Ga0233438_100098595 | 3300024255 | Seawater | MKYLAILVFVDKKILQIVNLSPSESWVEKLTHVHPMKQITYATIVQVVVFFGMLGMFKVNSWIFSV |
(restricted) Ga0233438_101221744 | 3300024255 | Seawater | EFVDKKILQIVNLAPSESWIEKLTHVHPMKQIFWASIVQVSVFFGMLGMFQVNQWIFST |
Ga0228635_10839493 | 3300024328 | Seawater | VGVEKVLDSREKKILQVVNLSPSESWIEKLVHVHPMRQITYASIIQVSVFFCMLGAFQVN |
Ga0244777_100273134 | 3300024343 | Estuarine | VGVEKALDSKKVLQAVNLSPSESWIEKLVHVHPMRQITYASIIQVSVFFCMLGGFQVNQWIFST |
Ga0208667_100042426 | 3300025070 | Marine | MDKKVLQVVNLAPSESWIEKLVEIHPMKQITYAAIVQVVVFLSMLGAFQINTWIFSA |
Ga0208667_100248110 | 3300025070 | Marine | VEKKILQAVNLSPSEEWVEKLTEIHPMKQIFWASIIQVSVFFGMLGMFQVNSWIFSH |
Ga0208013_10042984 | 3300025103 | Marine | VEKKILQAVNLSPSEEWVEKLTEIHPMKQIFWASIIQVSVFFGMLGMFQINQWIFSH |
Ga0208793_10102665 | 3300025108 | Marine | MDKKVLQVVNLSPSESWIEKLVEVHPMKQITYAAIVQIVVFFSMLGAFQINTWIFSA |
Ga0209645_10085428 | 3300025151 | Marine | MEKKILQVVNLSPSESWVEKLTTIHPMKQITYATIIQVAMFFSMLGMFQLNSWIFST |
Ga0209645_10735533 | 3300025151 | Marine | VGVEKALDSKKVLQVVNLSPNESIVEKLTKMHPMRQITYASIIQVTMFFGMLGMFQVNSWIFST |
Ga0209251_10138673 | 3300025668 | Marine | VDKKILQIVNLAPSESWIEKLTHVHPMKQIFWASIVQVSVFFGMLGMFQVNQWIFST |
Ga0208150_11051964 | 3300025751 | Aqueous | KKILQVVNLSPSESWVEKLTHVHPMKQITYATIVQATVFFCMLGAFQVNSWIFGH |
Ga0209362_12001022 | 3300025770 | Marine | MDKKVLQVVNLAPSESWIEKLTHVHPMKQIFWASIVQVSVFFGMLGMFQVNQWIFST |
Ga0208427_11826132 | 3300025771 | Aqueous | VDKKILQVVNLSPSESWVEKLTHVHPMKQITYAALVQVVVFFGMLGMFQ |
Ga0208917_10034563 | 3300025840 | Aqueous | MKYLAILVFVDKKILQVVNLSPSESWVEKLTHVHPMKQITYATIVQATVFFGMLGMFKVNSWIFSI |
Ga0209603_12199392 | 3300025849 | Pelagic Marine | LEKKILQVVNLSPSESWIEKLPNIHPMKQITYAALVQVVVFFGMLGMFQVNQWIFSA |
Ga0209666_11227903 | 3300025870 | Marine | MKYRVVFVDKKILQVVNLSPSESWVEKLTHVHPMKQIFWASIVQVSVFFGMLGMFQ |
Ga0209932_10063647 | 3300026183 | Pond Water | MKYLAILVFVDKKILQVVNLSPSESWVEKLTHIHPMKQITYATIVQATVFFGMLGMFKVNSWIFSI |
Ga0208963_10423062 | 3300027170 | Marine | VDKKVLQVVNLAPSESWIEKMVHVHPMKQIFWASIVQVSVFFGMLGMF |
Ga0208021_10586711 | 3300027191 | Estuarine | SYSRINKVDKKVLQVVNLAPSESWIEKMVHVHPMKQIFWASIVQVSVFFGMLGMFQVNQWIFST |
Ga0208678_10509782 | 3300027233 | Estuarine | VDKKVLQVVNLAPSESWIEKLTHVHPMKQIFWASIVQVSVFFGMLGMFQ |
Ga0208671_101716612 | 3300027757 | Estuarine | MDKKVLQVVNLAPSESWIEKLVEVHPMKQITYAAIVQVVVFFSMLGAFQ |
Ga0209302_100025514 | 3300027810 | Marine | MNKKVLQVVNLSPSESWIEKLVHVHPMKQITYASILQVVVFFFMLFMFKVIGSYV |
Ga0228674_11175341 | 3300028008 | Seawater | VLQVVNLAPSESWIEKLVEVHPMKQITYAAIVQVVVFFSMLGAFQINTWIFSA |
Ga0257127_11249413 | 3300028189 | Marine | KVDKKILQIVNLAPSESWIEKLTHVHPMKQIFWASIVQVSVFFGMLGMFQVNQWIFST |
Ga0233394_10869632 | 3300028391 | Seawater | MEKKILQAVNLSPSEEWVEKLTEIHPMRQIFWASIIQVTVFFGMLGMFQ |
Ga0315322_104033471 | 3300031766 | Seawater | SYSRINKVDKKVLQVVNLAPSESWIEKMVHVHPMKQIFWASIIQVSVFFGMLGMFQVNQWIFST |
Ga0315315_116931931 | 3300032073 | Seawater | EKASASRKVLQVVNLSPSESIVEKLTEIHPMKQIFWASIIQVSVFFGMLGMFQVNSWIFS |
Ga0316201_101056425 | 3300032136 | Worm Burrow | MKYLAILVFVDKKILQVVNLSPSESWVEKLTHVHPMKQITYATIVQATVFFGMLGMFKVNSWIFGH |
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