NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244777_10001546

Scaffold Ga0244777_10001546


Overview

Basic Information
Taxon OID3300024343 Open in IMG/M
Scaffold IDGa0244777_10001546 Open in IMG/M
Source Dataset NameCombined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16423
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (91.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012098Metagenome / Metatranscriptome283Y
F016389Metagenome / Metatranscriptome247Y
F030064Metagenome186Y
F084140Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0244777_1000154623F030064AGGAGVTNTFMTLGIVAGALISVGVLLSPIYKRVKRWAQWMERFMRDWEGEEESPGRDRVSGVMERLNNVDGELSQNGGFTTVKDRVDRLYENQVLIMDAFDELSERLINIENCLMNNQTEDEK
Ga0244777_1000154627F016389N/AMPVIRKFAVQGHAIPSIVHEPRGPFPPEVLAEPEMTIDPSHSDSLHVGLDNIRFFKCRHCDAILVQEDLDDHICEE
Ga0244777_1000154630F012098GAGGMPKVHNIGPKHFVQLIDLPVIWGKKFVVRGWTQEIEEPFRTSEPFLVRLPKYKALAFGKWTGFKTEEDALKSALNTREVTYDDFTEEAGWTAPDSDREASLKDINARLDSVDGAVHVHDWQTYYRMAEESQQKPS
Ga0244777_1000154631F084140GGAGMYTIGKLITEWQKSHNKNLLDEVVLGTEVFNAIAKELKKRA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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