NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10017719

Scaffold Ga0214919_10017719


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10017719 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8185
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034151Metagenome / Metatranscriptome175Y
F058810Metagenome / Metatranscriptome134Y
F085212Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1001771913F058810AGGAGMMEHINSSIDTICGVKTKFVETFVQNEEIKSQLQTYIDAQQSFAKTVAKSTVDFFTTLGSSVAAFDSTQAFKTK
Ga0214919_100177196F085212N/AMKAFVETTKDWSTPVSNHIYYLSDDKRKMYAFYNIDTKTVKTFIKPIGFDPRYRTFKELKRK
Ga0214919_100177199F034151N/AMMRAKISHNMISFITVRRGEWILKVSVFKNKQIMVVAQNLYEADKFYIRYFIDQNMAADFIEQLVIEE
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