| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10001022 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 48871 |
| Total Scaffold Genes | 89 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 74 (83.15%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005167 | Metagenome / Metatranscriptome | 410 | Y |
| F009741 | Metagenome / Metatranscriptome | 313 | Y |
| F012098 | Metagenome / Metatranscriptome | 283 | Y |
| F014843 | Metagenome / Metatranscriptome | 259 | Y |
| F016389 | Metagenome / Metatranscriptome | 247 | Y |
| F025484 | Metagenome / Metatranscriptome | 201 | Y |
| F030064 | Metagenome | 186 | Y |
| F035737 | Metagenome / Metatranscriptome | 171 | Y |
| F084140 | Metagenome | 112 | Y |
| F091303 | Metagenome / Metatranscriptome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_1000102219 | F009741 | GGAG | MTQKFDGVYDYTKPWRAPIQPDQVQKKYSYQGPWASNMERLTQQALMVMNIPGADIQAMVRPPLPQIQLFPDRYGYGDRSQPGIDDIVTIDRNYTEPRVSWYSGGVAGYQAAERNALGST |
| Ga0214921_1000102220 | F025484 | GGAG | MADDGDGMLTMELQARQIAENATKYNGSSPCPTCGVIMNPVEFMANRGHCLSCVTQRNTQRVKGKMA |
| Ga0214921_1000102221 | F005167 | AGG | MAVNSSRSMNASLDEGATDGKYRKARPDTEVGMGSEDTIANRQSLHAFYGYGFLTTEYPSKVNPGK |
| Ga0214921_1000102228 | F014843 | GGTGG | MTSRKTADAEHWLQSHGIINYDDLIDYSFNLEGEDLKKRQFVMSRSRAPIEMYVDADPAMCAWVFEEQGIPAVMFMNPGYLAVERRPDAPKKVRQWSQIEDSITRVNIAKSRDAANPKELEFWDD |
| Ga0214921_100010225 | F035737 | AGGAG | MIKKFHVTDQPWAHELEKGVEAYTDMLFEAVMEGEEEDIPETLSAEPFCGCSDCFWRETLYYLVPRIIEGYKEGKLELED |
| Ga0214921_1000102276 | F091303 | GGTGG | MSEQLDRKTLMVNQRRGIKQHFMFDTVRGVKSKATSSIVTWGGPGKGVQGESVNSQNNASKFIINRNWKPL |
| Ga0214921_1000102280 | F030064 | AGGAG | VTMFFTTIGIVAGALISLGVLLSPFYKKIKRWAQWMDRFMRDWEGEPAEPGRDAVPGVMERINKLDGELSNNGGKSTKDVVDKLLANQGVLMEAFVEMGERLIAIENCLTVTLQDEKN |
| Ga0214921_1000102284 | F016389 | N/A | MKLIRKFAVQGHAVPSSVHSPRGPFPPEVLAQPQMEMEEHHSDSLHVGLDDVRFFKCRACREVLLETELTDHDCEEINGY |
| Ga0214921_1000102287 | F012098 | N/A | MPKVHNIGSKRFIQFTNFPFEWGSKVVVRGWTQEIQEPFRTATPLIVRLPKYKALVLGKWSGMLNEEDALSGALERREVTYDDFTKEKGWTPATDSNREASSNDIDSRLDYMDGAVNVYIRKALDDMAKESESSGH |
| Ga0214921_1000102288 | F084140 | GGAG | MFILGRHLTTWQRNQSQADIDEVVMGAEAFYAIAKELKRRSQSVL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |