NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222711_1000647

Scaffold Ga0222711_1000647


Overview

Basic Information
Taxon OID3300022837 Open in IMG/M
Scaffold IDGa0222711_1000647 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1699
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9623
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016994Metagenome / Metatranscriptome243N
F022908Metagenome / Metatranscriptome212Y
F025320Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0222711_100064711F016994AGGAGGMATENNTTFVAATGSLLGKELEFITIDAGEELANHLLKNETANAIENTVRQYGNIVGAGPLFDTNASRTYIVEGTDMFVGAPASSGGSFTLTESGADGTSVGTLLAALKALGTVDGIDLNDSGTTAKIENLEL
Ga0222711_100064713F025320AGGAGMTTKVNPTKLNTTDHLSGKTITAVTVDFVVNGTDFSSTEMGPLGAVQAAIATMTQEATPIIITALRSDGSNAGQVFDMVFEGEFGTDTYDGSNSEAFAAYLQTVVRLLTSVGAGSVNLSSATVVAATAASF
Ga0222711_100064714F022908N/AMPSHLQEAIKIVTSPDSQLRDKTPRIYAMPKDEHMPKGFTNLKRMRYLDHDVCGGRNIKRWLWRDYNPELILQQPPFDRCEDQSEVFTLIRDPEERWWSGIKDMFYFMPWYGWWANDKIMEQWPHFGRGTLRYHDIMEQVKPQHLIKCDDGLNDRIIKFAKDNGLLCFGNIPHEKALRHTKPDIKKLEDKGVKELKAWLKENPDRQQQLDDYLEPDWQYWNRVEEQD
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