NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224712_10350338

Scaffold Ga0224712_10350338


Overview

Basic Information
Taxon OID3300022467 Open in IMG/M
Scaffold IDGa0224712_10350338 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)698
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004806Metagenome / Metatranscriptome423Y
F069292Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0224712_103503381F004806N/AAVAGAAAIQGGLQQMTKLELLYAQKAKKLDQLCAVAARELGLGDLATLSVQDRIRVDDQVEQYVEQWEETVEMRTSLTIRPITPLRRLLAEYQDICERILDEHDIDAGLWAYRKDIQKRRRPAPL
Ga0224712_103503382F069292N/AEGAMQPNIAGPLNAQCGKCLYWEQHDGVAAMGECKRYPPQVVMVRDAEDAQPTASSEWPLTLSAAWCGEWIDQKYRTPQASA
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