| Basic Information | |
|---|---|
| Taxon OID | 3300021420 Open in IMG/M |
| Scaffold ID | Ga0210394_10000094 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 217133 |
| Total Scaffold Genes | 210 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 112 (53.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004159 | Metagenome / Metatranscriptome | 450 | Y |
| F006090 | Metagenome | 382 | Y |
| F054123 | Metagenome / Metatranscriptome | 140 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210394_10000094100 | F004159 | AGGAG | MPSSHDDDHERSAAGMDYDFPIREKASQLGNALAESGPEALFEEIENLLPESWREHIRSYPIVAVVLGVGVGLWLGMKKGDEIIAAGTSMVTAAAMENVANIMHGAAGGGDE |
| Ga0210394_10000094134 | F054123 | AGG | MNILHAITLAALLHHAPAPIPVCHSGAVSYRFVGTPGETFAYEGASYTVPKSGSIELVADHGVRVYLAANGRTLPLEVWPIDAFGTRTVPLQAASSAPVQGDSAPISTINN |
| Ga0210394_10000094143 | F054123 | AGG | MNILHAITLAALLHRSPAPIPVCHTGAVSYRFVGTPGATFVYEGARYVVPNSGSIELVADGGIRVYLAANGRTLPLDVWPIDAFGTRTVPLQAVSSSPAQGDSGPISTINN |
| Ga0210394_1000009418 | F006090 | N/A | MSLLMQRKGPAAPLPRLEGKEVLVGPNPDAAKVKGVMFGGRKQLLSDIAGEDGFTVIIAKLSPRTASYTKTPLASSWCEFASLIELDRTIYETLRQKYPNILALIGAASAELGIGRVYKSLDSTELVKFLENQALFHHQFQKFGNVRFERMPNGGRMICSDYPVYSPIFCGSAVGFYLESILRHGGSEPSVVETKCQTLGDAFCAFEMTWR |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |