| Basic Information | |
|---|---|
| Taxon OID | 3300021375 Open in IMG/M |
| Scaffold ID | Ga0213869_10000596 Open in IMG/M |
| Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 28700 |
| Total Scaffold Genes | 47 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (8.51%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: North Carolina | |||||||
| Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002033 | Metagenome / Metatranscriptome | 601 | Y |
| F013325 | Metagenome / Metatranscriptome | 272 | Y |
| F024830 | Metagenome / Metatranscriptome | 204 | Y |
| F038691 | Metagenome / Metatranscriptome | 165 | Y |
| F059026 | Metagenome / Metatranscriptome | 134 | N |
| F090614 | Metagenome / Metatranscriptome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0213869_1000059616 | F002033 | N/A | MNKFNKFFTDHGIKIIIIIMLLTYFKSCGIDSEVERIKKEQRILTNEIDTLSSQIVDEEEMIYLIKNIPAWKTLRIEEISDKERISINALEEKDN |
| Ga0213869_1000059617 | F024830 | N/A | VANIPIIPGVPTPSSGDPKCALTFCGRIIAQVDCIQIIMQGTNACIDIQFFGKDGKPLDLTKFTEIQIMLYNELDCTIANFWWPDIPTGCKGLLMNILQYTDAKGVIHNKGLIRICLDPACTKIGPGGIFAEILLHELTTTGTPETLGISCLQVGKIIPSRIYENGCDDGCS |
| Ga0213869_1000059642 | F090614 | N/A | MDTIHKIIRRVRSWFLPKHEGKFEYSPEGFVKARRWAKNQPHPKFPDHPTLSLWNHVNSNHIDSEYKLSEINKVKTKKNKSI |
| Ga0213869_1000059644 | F013325 | N/A | MAKTIKMEQKQYATQVGPIGSAEEQAALANEVIDPKDVKEYIPRKMSEIIKDKKAALKKNEDLLRSLQTNEYDIPVGTAKLYKQIMKFLEKEADWGHTTATGLIMLYSNLKEQQPVIREKDWDGIIKLRGTSITIFWSMITSMKGKGFFAARDFVEMMAAFGQDLSKVVGQVHTDNQALRENHTHMAELDQEVNRPEVILDVAIDKYNEAEEELNKLMDEVDPIVETV |
| Ga0213869_1000059645 | F038691 | N/A | MGFHKRYIDNEQVLRLYEDGGISRIRDWYTKGVDALITETGLASQVGHVISDDEWLQFGSVRQDEEIFKLIQKEYGTPVVKK |
| Ga0213869_1000059646 | F059026 | N/A | MEHIKDYKLFKESLDTELITERFSSDILRQFAAQDGGSRWRGGIAKDMQKFANLALDKISDADFTTTTPEAYWKGGDAKDPNKVGFFVDADPGFIKWAKANKKYLPSGLSLGNISKYGVVLSVIRGGIGMYHGFAMDRGSSYSRHRKGTEERYGVLAKDYETRSLYNGWEGAPAAKVTRKNLIDAATRVYVLDLNSLRDKYDVSGLKSDRANAKSGATALKDAKTIKKENQARYDAILTDRAAMTDVDKSVKDSIELLNQHISDALKAGTMDKYGHLTIGEDPRGRSIKITDGANYIKNLLDDYQRYKDYERQQKEAEDEGRKDNWYSKEVKNYAKRIQDRARAVKAKNYAW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |