NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10005186

Scaffold Ga0206677_10005186


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10005186 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10354
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045653Metagenome / Metatranscriptome152Y
F048209Metagenome / Metatranscriptome148Y
F069851Metagenome / Metatranscriptome123N
F075861Metagenome / Metatranscriptome118N
F104782Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0206677_1000518610F104782GAGGMPEYVMAMSPAEMTEFLESEFYDLEDGPKRCIATMMAMLMDHSEFLEEQGLEEKFDFLYDNDGGDLH
Ga0206677_1000518622F048209AGGAGMTDLSEKPCRCGDTMGEVIGFQERVTDGQMVKYRVCWYCPECHAVEKAIGRETFVEIIHD
Ga0206677_1000518624F069851GGAGMDFVKDTIDANLDNLVDPKNRCVEATDAASNELIIAWTEENPHDLQEFMFNDSPGTTWEQFHVDMAKAFAGKMSHDDFFIKYEYFYDIAKRDIMEDLDSKIWNRYTDLHDVPVLDMHDYNGVRREDF
Ga0206677_1000518625F075861GGAGGMFSLARNGERFGYCAKDKAGIEKFRGWYIDDHVVAEAAQIQLRLWNESKTSLLQSDAEQVARDTLEEQITIVEV
Ga0206677_100051867F045653GGAGMNILTYLNWVRKLWSTVVEIVKLIEETIPDDGAGKEKLIAFDIMLKAALEKADDIDESFDKLQPVAHDIVAAAVTLFNATGLFKKS
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