NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10001226

Scaffold Ga0206677_10001226


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10001226 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23881
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (44.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012177Metagenome283Y
F018355Metagenome / Metatranscriptome235N
F027056Metagenome / Metatranscriptome196N
F036975Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0206677_1000122627F027056GAGGMIEVNGTEYPVRYSMKALKKFERKTKVNVFSLSDPSKLSAEACGFLCYVGVECGCSFEGQEFDMDLPTFEDYITLEHVTQCFDALGEYSSEKKA
Ga0206677_1000122629F018355N/AMKVTIQKACKLRGHNWKKGATPSVTSEFAAELKAKGYLDAPKKKKDSDNNDLIEE
Ga0206677_1000122632F036975GGAMAQGSLEQKGGKVGFEGIGADIKPLLKQFEQLRKQVSDQKVQKRIHRAVGKIYKDEMLNNIVDARQTIRIRRGGKGGFDIKPGTLRRSVKVWQIDKQHSTFWVGPRVGRRAPKDADAWFANIVEGDDQFIKGNNRNKGVFARSIANKRGEAFEKMRKKYKFQIDKVARNKGKK
Ga0206677_100012265F012177AGGAMTDIERFWLDLMDSRRYAITEVYGAECASRYRPHHIEKEYFINNSGTFTAHPDVTQYNKDFWVMCETHYFQQREAYRRKLRANWHRVQQSDEYKSRKREREMLKDYISEAINGNGKEKDARTTKKEG
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